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Showing 1253 open source projects for "https"
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YeastpRofileSpearman
Software to calculate profiles around TSS and TTS of yeast mRNAs
YeastpRofileSpearman is a portable Windows form application, written in C#, to compute the profile of a genomic variable around transcription start (TSS) and termination (TTS) sites of yeast mRNAs. It is variation of the software application YeastpRofile (https://sourceforge.net/projects/yeastprofile/) in which Spearman’s rank correlation coefficient (Rs) is computed in place of Pearson correlation coefficient. The profile is obtained by calculating the genome-wide Rs between the genomic variable values and the TSS (or TTS) counts at incremental shifting of transcribed strand. The data of TSS and TTS counts used to compute the cross-correlation profiles were taken from the work of Pelechano et al. (1). ... -
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hcfr
Free Video Projector/Monitor Calibration Software
...If you feel the program has been of value to you since I started working on it about 3 years ago please consider a contribution via the link below. Thanks! -zoyd https://www.paypal.me/zoyd -
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FreeCAD-PCB
Import your PCB boards to FreeCAD
.... ***** Supported software: - Eagle (*.brd) - Razen (*.rzp) - FreePCB (*.fpc) - gEDA (*.pcb) - FidoCadJ (*.fcd) - KiCad (*.kicad_pcb) - IDF v2/v3 Requirements: FreeCAD >= 0.14 Project forum: https://sourceforge.net/p/eaglepcb2freecad/forum/ -
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TRUST is no longer hosted on SourceForge! Please visit: https://github.com/cea-trust-platform/trust-code
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JSONVisor
Visor for mass spectrometry JSON files generated by Integrator
Visor for mass spectrometry JSON files generated by the Integrator program (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/jsonvisor3/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124 -
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Xmaldi
Viewing collections of MALDI spectra and perform PCA and DFA analyses
Xmaldi is an application for viewing collections of MALDI spectra and perform PCA and DFA analyses on them (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/xmaldi3/code/ci/default/tree/README.md -
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KidneyExplorer
Kidney proteomics data explorer enables you to investigate diseases
KidneyExplorer enables you to interactively survey kidney proteomics datasets from different kidney disease models. Here you can download the corresponding SQL database dumps. The original website for the shiny app is: https://kidneyapp.shinyapps.io/kidneyorganoids/ -
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...It supports PCB layout programs with several netlist formats and can also produce SPICE simulation netlists. It is also often used to draw one-line diagrams, block diagrams, and presentation drawings. The source code for TinyCAD is now on GitHub: https://github.com/matt123p/TinyCAD Online documentation can be found here: https://github.com/matt123p/TinyCAD/wiki
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ScadaBR
Open source SCADA
We are now on GitHub: https://github.com/ScadaBR/ScadaBR ScadaBR is a SCADA (Supervisory Control and Data Acquisition) system with applications in Process Control and Automation, being developed and distributed using the open source model. -
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TVscript
Exploration of the removal of count variable transcripts.
> See TVscript wiki: https://sourceforge.net/p/tvscript/wiki/Home/ Related Software: 1. CStone: https://sourceforge.net/projects/cstone/ 2. CSReadGen: https://sourceforge.net/projects/csreadgen/ 3. CView: https://sourceforge.net/projects/cview/ 4. ChimSim: https://sourceforge.net/projects/chimsim/ 5. TVScript: (See wiki) 6. SeQuester: https://sourceforge.net/projects/sequester/ 7. -
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LaiaMotifs
Search for MHC-like motifs in peptide collections
Search for MHC-like motifs in peptide collections (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/laiamotifs3/code/ci/default/tree/README.md -
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LP CSIC/UAB Apps and Code
Software and Code from Laboratori de Proteòmica CSIC/UAB
Software, Code and Documents from Laboratori de Proteòmica CSIC/UAB ( LP-CSIC/UAB: http://proteomica.uab.cat ) -
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aseryla
Aseryla code repositories
This project describes a model of how the semantic human memory represents the information relevant to the objects of the world in text format. It provides a system and a GUI application capable of extracting and managing concepts and relations from English texts. https://aseryla2.sourceforge.io/ -
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KimBlast
Blast+ the easy way
KimBlast GUI formats and indexes Fasta databases for Blast, performs Blast searches and analyzes results. Python 3.x version. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/kimblast3/code/ci/default/tree/README.md -
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U-Net Fusion RFI
U-Net for RFI Detection based on @jakeret's implementation
...Additional work is being done to add custom layers to this model for further experimentation, including Squeeze/Excitation layers (unimplemented.) Sum Threshold (in fusion as an expert, and in testing as a comparison) requires the use of AOFlagger by Andre Offringa. You can find this code at https://gitlab.com/aroffringa/aoflagger. This project will use the aoflagger program within the code, so you may need to ensure that any environment variables are set for aoflagger before use. cite: https://sourceforge.net/p/u-net-fusion-rfi/wiki/cite/ -
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StateS
Draw and Simulate Finite States Machines (FSM)
Simple tool for drawing Finite State Machines (FSMs). StateS has moved to GitHub and will no longer be updated on SourceForge. New link: https://github.com/ClementFoucher/StateS -
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MVSE
Estimator of climate-driven, mosquito-borne viral suitability index
...UPDATE Oct/2021: note that a correction has been made to the documentation of v1.01r. The most recent version is the file "MVSE_v1.01r_corrections_to_documentation.zip". No changes have been made to the code itself. Article for original v0.3: https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.132 -
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miRDP2
Accurately and fast analyzing microRNAs transcriptome in plants
...By incorporating newly updated plant miRNA annotation criteria, the accuracy of miRDP2 is also markedly improved. Our results demonstrate miRDP2 as a fast and accurate tool for analyzing the miRNA transcriptome in plants. Reference: https://doi.org/10.1093/bioinformatics/bty972 -
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PeMSyn
Matlab/Scilab-FEMM based GUI to Assist the Design of Permanent Magnet
Release: PeMSyn 2.4 - 03.Sep.21 Requirements: - Matlab 2018a or later (with Parallel Computing Toolbox ) - Scilab 6.1.0 or later - FEMM 4.2 (21Apr2019 or later) Matlab/Scilab-FEMM based GUI to Assist the Design of Permanent Magnet Machines: - Surface Mounted PMSM: Inner Rotor / Outer Rotor - Inset Mounted PMSM: Inner Rotor / Outer Rotor - Spoke-Type PMSM: Inner Rotor - Coreless Machine - Different Slot types available - Permeance Coefficient Assistant --- No-Load and On-Load estimation for PC during the design process - Winding Wizard Assistant - Performance Simulator (FEMM Based) --- No-Load and On-Load parameters assessment considering armature reaction and saturation effects --- Torque Curve Capability assessment --- Parallel Processing (Matlab only) TUTORIAL included! https://www.youtube.com/channel/UCP2N1ELg1SAqlA8VCkSWRlw https://dx.doi.org/10.18618/REP.2020.2.0009 http://dx.doi.org/10.1109/COBEP/SPEC44138.2019.9065650 geyverson@ieee.org -
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Dark Master - Fork
Fork of Dark Master and allows astrophotographers to match dark frames
This is a fork of the longer unmaintained Project "Dark Master" which still can be found here: https://sourceforge.net/projects/darkmaster/ Dark Master allows astrophotographers to quickly match dark frames to light frames based on temperature. The inputs to Dark Master are the directories to the light images and dark images. The output is a DeepSkyStacker file list. Updates for the fork: - Sorting of files: Via a pattern you can determine, how the groups and images processed by DarkMaster are saved in a directory. ... -
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A-GM Manager
Web application for long-term monitoring of radioactivity levels
...It includes an open-source Web application (A-GM Manager) running on a SOHO server (e.g. NAS from QNAP for Small Office Home Office servers) connected to a Geiger-Muller radioactivity counter device such as C-GM Counters (https://sourceforge.net/p/c-gm-counter) or compatible counters from GQ Electronics LLC. Other compatible or DIY Geiger-Muller counters could also be used. -
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viRome
R code/package for virus small RNA sequence data
Please use code here: https://github.com/mw55309/viRome_legacy -
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openPOWERLINK
An Open Source POWERLINK Stack
...A full documentation of the stack is available on the web site: http://openpowerlink.sourceforge.net The following page can be used to report a security vulnerability: https://sourceforge.net/p/openpowerlink/discussion/ -
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TrioCFD
CFD software
TrioCFD is no longer hosted on SourceForge! Please visit: https://github.com/cea-trust-platform/TrioCFD-code -
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Astronomy Linux 21.04
This is an open project "Astronomy Linux 21.04" for amateurs
...********************************************************************************** ************************* Do you need any help? ************************* 1. Forum https://groups.google.com/forum/#!forum/astronomy-linux 2. New open project “Astronomy Linux” https://www.cloudynights.com/topic/ 3. FB group https://www.facebook.com/astronomylinux/
