Search Results for "pam-python" - Page 13
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Showing 2609 open source projects for "pam-python"
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Funi
Python script for calculation of deflection of elastic ropes.
...The graphics of deflections and tensions are shown with reference to X coordinate, while the graphic of stretches is shown with reference to the curvilinear coordinate. The solution is found by iteration, by mean of Scipy Minimize functions of Python, version 1.10. The results may be exported to .csv or .txt files. Gui is provided with tkinter windows. -
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GrowthRates
Calculate growth rates from microplate reader output
The Bellingham Research Institute (BRI) develops and distributes software that is free of charge to academic and other non-profit organizations. GrowthRates is our software tool that simplifies the analysis of microplate reader output from microbial growth experiments without having to program in Python, R, or MATLAB. It automates the calculation of growth rate parameters, including rates, lag times, maximum population density. Manual calculation of those parameters requires at least 5 minutes per well, or 32 hours for a 384 well plate. GrowthRates completely analyzes growth parameters in all 384 wells in under 5 minutes. ... -
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CPAT
RNA coding potential assessment tool
Using RNA-seq, tens of thousands of novel transcripts and isoforms have been identified (Djebali, et al Nature, 2012 , Carbili et al, Gene & Development, 2011) The discovery of these hidden transcriptome rejuvenate the need of distinguishing coding and noncoding RNA. However, Most previous coding potential prediction methods heavily rely on alignment, either pairwise alignment to search for protein evidence or multiple alignments to calculate phylogenetic conservation score (such as CPC ,... -
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MaxFEM
Software for electromagnetic simulation
MaxFem is an open software package for electromagnetic simulation by using finite element methods. The package can solve problems in electrostatics, direct current, magnetostatics and eddy-currents. Since version 0.4.0, MaxFEM requires Python 3. We have moved the installers to the MaxFEM website (see below). In order to improve MaxFEM, we will require you to fill out a simple form before downloading them. -
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...It allows to load two, three and four-dimensional images of both techniques and in the case of 3D images it allows the simultaneous visualization of the three orthogonal planes which facilitates the localization of the regions of interest. It has been developed in Python with a user-friendly interface for healthcare personnel. Thanks to Artificial Intelligence and deep learning methods, MELAGE has tools to estimate volumes of different regions of interest in both images. Moreover, it allows to perform linear, area and volumetric measurements in a very intuitive and easy way, being able to instantly see the segmented region in a new tab. ...
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crossmap
convert genome coordinates betweeen assemblies
CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format. -
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SENAITE
SENAITE - professional, open source LIMS/LIS software
SENAITE provides professional open source laboratory software for enterprise environments, especially focused to behave with high speed, excellent performance and good stability. -
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EvilTransform
Transport coordinate between earth(WGS-84) and mars in china(GCJ-02)
...The project implements forward and inverse transformations (WGS→GCJ and GCJ→WGS) as well as a higher-precision inverse method (GCJ→WGS exact) that trades speed for sub-meter accuracy, and it includes a utility for computing geodesic distance in meters. It’s implemented (or ported) across many languages and platforms — you’ll find reference implementations in Go, C/C++/Obj-C, Java, JavaScript, Python, PHP, C#, Haskell, Rust, Swift, MATLAB and more — which makes it easy to drop into server, client, or mobile codebases. The README documents the API signatures and describes expected numeric accuracy (e.g., ~1–2 m for the standard inverse, <0.5 m for the exact inverse) and when to use each routine. -
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nmeasim
Simulate GPS+AIS sentences and send to a navigation SW
NMEASIM sends NMEA 0183 sentences to a navigation SW such as OpenCpn via a serial com port or a UDP channel. These NMEA sentences simulate data coming from a GPS(sentence $GPRMC...) and an AIS receiver(sentence !AIVDM...) All the parameters : name, mmsi, initial position (lat/long), COG, SOG for my boat as well as for AIS targets, and I/O configuration (com port...) can be edited in the 'datasimul.json' (file created by the app with default values in V1.0) Just Download the nmeasim.exe... -
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biblioAssist
python3 version of bibus
python3 version of bibus https://sourceforge.net/projects/bibus-biblio/ It is nothing more than "it works on Debian testing (bookworm) AMD64. " -
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Python Laboratory Operations Toolkit
many useful snippets for using python in a laboratory
A toolkit of Python software useful in a laboratory data acquisition and analysis environment. Includes support for such protocols as VXI-11 (and its extension, LXI), Vernier LabPro (now very old), and National Instruments DSTP (now very old). Also includes data analysis and modelling tidbits. Python3 updates are on the way in the very near future for the biggest packages. the vxi11 package is fully up-to-date, although see the blog post about python 3.13 -
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Firmware mod for the GWInstek GPP-x32x series lab bench supply.
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ViReMa
Viral Recombination Mapper
ViReMa (Viral Recombination Mapper) detects and reports recombination or fusion events in virus genomes using deep sequencing datasets. Feb 2014 - Our paper (Open Access) is available at Nucleic Acids Research: "Discovery of functional genomic motifs in viruses with ViReMa–a Virus Recombination Mapper–for analysis of next-generation sequencing data" http://nar.oxfordjournals.org/content/42/2/e11 This is an on-going project and updates will be regularly posted. Please get in touch... -
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NuPIC
Numenta platform for intelligent computing
The Numenta Platform for Intelligent Computing (NuPIC) is a machine intelligence platform that implements the HTM learning algorithms. HTM is a detailed computational theory of the neocortex. At the core of HTM are time-based continuous learning algorithms that store and recall spatial and temporal patterns. NuPIC is suited to a variety of problems, particularly anomaly detection and prediction of streaming data sources. For more information, see numenta.org or the NuPIC Forum. If you want... -
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Liquid rocket engine parameter solver
This is the liquid rocket engine parameter solver Alpha release 1.
This is the liquid rocket engine parameter solver Alpha release 1 which is the first version for this project. This first version will help to find thrust values by giving some values to the system -
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Warehouse Controls
A versatile building control system using ESP32 type controllers.
A building control system which includes an Access control database combined with a easy graphical user interface. This system includes at conception, an array of controllers and sensors to allow the monitoring of occupancy, access, lighting and HVAC. -
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PSSPT
PSSPT (Protein Secondary Structure Prediction Tool)
PSSPT (Protein Secondary Structure Prediction Tool) Please, visit our GitHub page for more detail. -
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ED Software project contains several programs used (mostly) for processing gas-phase electron diffraction (GED) experimental data.
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Argo
ARGO is a program for analysis of electronic structure calculations
...This choice symbolizes the pursuit of making the best use of quantum chemical calculation results. ARGO facilitates the analysis of results obtained from quantum chemistry codes, specifically Gaussian. This task is achieved through a set of Python scripts. Our code is freely available throughout the academic community with the ambition to be used, to be supplemented by others, and become an indispensable tool for optimum utilization of quantum chemical calculation results. -
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TexGen is a geometric textile modelling software package to be used for obtaining engineering properties of woven textiles and textile composites. Citing TexGen We would be grateful if you could acknowledge use of TexGen where appropriate and suggest using one of the following references: L P Brown and A C Long. "Modelling the geometry of textile reinforcements for composites: TexGen", Chapter 8 in "Composite reinforcements for optimum performance (Second Edition)", ed. P Boisse,...
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BrepCAD
Open source 3D software based on opencascade（CAD）
...This framework can basically meet the needs of graduation design of college students and enterprise level lightweight CAD software development. Because it is based on the python language, the running efficiency cannot be compared with that of the c++version. But there is no bad language in the world. Only the less excellent programmers can write software with good performance as long as they continue to optimize the algorithm. -
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Advanced Division
Divide numbers with recurring decimals
Library / application for dividing numbers with recurring decimals. Written in JavaScript, Python and Dart. Learn more: https://advdiv.ratajs.cz/ Installation instructions: https://sourceforge.net/projects/advanced-division/files/
