Search Results for "processing" - Page 10
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Showing 1029 open source projects for "processing"
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HSRA
Hadoop spliced read aligner for RNA-seq data
...This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. HSRA currently supports single-end and paired-end read alignments from FASTQ/FASTA datasets. Moreover, our tool uses the Hadoop Sequence Parser (HSP) library (link above) to efficiently read the input datasets stored on the Hadoop Distributed File System (HDFS), being able to process datasets compressed with Gzip and BZip2 codecs. -
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Ghawwas_V4
An open source system for Arabic corpora processing
...Accept Windows and UTF-8 character encoding g. Accept TXT, DOC, DOCX, RTF and HTML formats h. Export the processing results in CSV file format -
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QuickerSim CFD Toolbox for MATLAB®
Fluid flow and heat transfer simulations in MATLAB®
QuickerSim CFD Toolbox is a powerful application for performing fluid flow and heat transfer simulations in MATLAB ® making CFD analysis more accessible than ever. Our Toolbox provides a selection of solvers and data processing tools, which are compatible with other MATLAB® toolboxes and external CFD software. You can set up your simulations quickly as well as tailor the code to your own specific needs and create a custom multiphysics models. QuickerSim CFD Toolbox is appreciated by engineers for its simplicity and flexibility. It doesn’t require any preliminary programming skills and enables the development of efficient tools dedicated to specific projects. ... -
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MoCalc2012
GUI for MOPAC, DFTB+, GAMESS, Firefly, NWChem, ORCA and PSI4
MoCalc2012 is a simple, efficient Graphical User Interface for MOPAC, DFTB+, GAMESS(US), Firefly, NWChem, ORCA and PSI4. -
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cocolib / light field suite
CUDA library for continuous optimization and light field analysis
Library for continuous convex optimization in image analysis, together with a command line tool and Matlab interface. Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE: ... -
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GPU, a Global Processing Unit
A framework for distributed computing
An extensible framework for distributed computing on P2P grids. We support peaceful free and open research and build an internet supercomputer. We render movies, solve Eternity puzzles, predict climate and improve a ~30 GHz cluster of clients. -
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Mavscript
Calculations in a text document
Mavscript allows the user to do calculations in a text document. Plain text, LaTeX and OpenOffice Writer files (.odt) are supported. The calculation is done by the algebra system Yacas (default), Jasymca or by the Java interpreter BeanShell. -
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CRP - Chemical Reaction Prediction
Predicting Organic Reactions using Neural Networks.
The intend is to solve the forward-reaction prediction problem, where the reactants are known and the interest is in generating the reaction products using Deep learning. This Graphical User Interface takes simplified molecular-input line-entry system (SMILES) as an input and generates the product SMILE & molecule. Beam search is used in Version 2, to generate top 5 predictions. Maximum input length for the model is 15 (excluding spaces). -
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lottie vectors
Create, display and process 2D vectors in a 3D window.
Lottie Vectors is an application for Matlab that alows you to do some pretty neat things -with vectors. More exactly -displaying them in ways that hopefully will allow you to explore and better understand your vector data. The basic idea is simple, take a vector defined in one of a few different types of data formats and map it on the screen. Add another vector and you start to form a 'route'. Each route or position vector can be accompanied with a 'force' vector. This can be used to... -
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PF_HP
Prediction of proteinfolding in 2D HP model
...Spende einen Cappuccino: Bitcoin: 1HqrdnfQgi9B4LW8UEvLAwh7X5gXPCoQ5B Litecoin: Lbo2jxD85ymyq5167r7yFVZkEr73F2h44B Paypal: paypal.me/GerritLeder Credits ====== Principle Investigator -------------------------- Gerrit Leder: protein folding algorithm design and testing, and initial implementation in Eiffel. Eiffel Consultant --------------------- Finnian Reilly: Eiffel code optimization and parallel processing adaptation. www.hex11software.com finnian at eiffel hyphen loop dot com -
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Combined Two-Wavelenght X-ray Tool
Complex data processing X-ray metods for analysis thin-film structures
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Fritzing Portable
Fritzing is an open-source hardware initiative that makes electronics
Fritzing is an open-source hardware initiative that makes electronics accessible as a creative material for anyone. We offer a software tool, a community website and services in the spirit of Processing and Arduino, fostering a creative ecosystem that allows users to document their prototypes, share them with others, teach electronics in a classroom, and layout and manufacture professional pcbs. -
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MS Data Miner
MS Data Miner - A web-based proteomics software
Data processing and analysis in proteomic studies is a significant challenge and very time consuming. MS Data Miner (MDM) is a freely available web-based software to analyze, process, validate, compare, and display output files from MS software, including Mascot (Matrix Science), Mascot Distiller (Matrix Science) and ProteinPilot (AB Sciex). It was developed to significantly decrease the data analysis time and to handle large proteomic studies. -
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MIPPY
Modular Image Processing in Python
MIPPY is a minimalistic DICOM image browser with built-in image processing modules. Its modular design means it can be extended with any number of user-created modules for image processing and analysis. -
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gvSIG CE (Community Edition)
The full-featured, easy-to-use desktop GIS with real processing power!
The Community Edition (gvSIG CE) is a fork of the gvSIG desktop GIS project (http://www.gvsig.org). It is open to external contributors and fully community-driven. Our official releases are designed to be portable and include all necessary binaries for Linux, Mac OS X and Windows. No installation necessary: Just download, unpack and run! -
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JSiteDescriptor
Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files. The binding site regions are extracted using grid based scheme. For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too). -
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IT++ is a C++ library of mathematical, signal processing and communication classes and functions. Its main use is in simulation of communication systems and for performing research in the area of communications.
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Drception
Fractals generator with powerful functionality.
Fractals generator with powerful functionality. E-mail: programmingspecial@gmail.com -
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Pipebar
A fast and accurate pipeline for DNA barcoding analysis.
...Here we proposed a pipeline for DNA chromatograms analysis of Sanger platform by open-source tools integration in order to reduce cost with standard commercial licences ensuring high quality, robustness with reduced time. Pipebar is a python application created to automatization of processing chromatogram trace files to high-quality DNA sequences for downstream analyses. -
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A shell for using the methods of Contextual Logic to do qualitative data analysis, mathematical research on the theory underlying Conceptual Knowledge Processing, or learning Formal Concept Analysis. It uses the framework provided by the Tockit project..
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IceNLP is an open source Natural Language Processing (NLP) toolkit for analyzing and processing Icelandic text. The toolkit is implemented in Java.
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Haytham Gaze Tracker
Haytham is an open source gaze tracker
...It provides real-time gaze estimation in the user’s field of view or the computer display by analyzing eye movement. Haytham offers gaze-based interaction with computer screens in fully mobile situations. The software is built by C#, using Emgu and AForge image processing libraries. LICENSE The Haytham is released under a dual license: FREE VERSION: The source code is released under GPL version 3.0. In short, it means that any distributed project that includes or links any portion of Haytham source code has to be released with the source code under a license compatible with GPLv3. COMMERCIAL VERSION: If you want to use the Haytham in a closed source commercial product, you must purchase the license. ... -
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux,... -
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MatNMR is a highly flexible toolbox for processing 1D and 2D NMR/EPR spectra in MATLAB and creating high-quality 1D, 2D or 3D plots. Fully GUI and/or script-based.
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PyUltimateRobot
Controls any Robot in Python
...b) Arms and linkages don't have to have super tight tolerances, because accuracy is achieved by tightly integrated visual feedback that's easy to program and low complexity processing. Ability to program easily with a GUI and visual interface that sees things from the robots' camera perspective. Flexible use of coordinate spaces that make programming arms with 6 or more degrees of freedom super easy. Got a bot arm with 13 linkages that can reach around corners? Easy. Simple arm with only 2 degrees of freedom, with one polar and one cartesian? ...
