Showing 548 open source projects for "java file transfer"

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  • 1
    This package contains code for use with Short Read DNA Sequencing technologies, and includes packages for ChIP-Seq, Whole Transcriptome Shotgun Sequencing, Whole Genome Shotgun Sequencing, SNP Detection, Transcript expression and file conversion.
    Downloads: 4 This Week
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  • 2
    An easy-to-use simulator for decentralized distributed scheduling in Clusters, Grids, and Cloud ecosystem MaGate 2.0 is now available from github! https://github.com/huangye177/magate
    Downloads: 0 This Week
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  • 3
    Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.
    Downloads: 0 This Week
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  • 4

    Cylindrical BLAST Viewer

    Alignments in Rotating Cylinder / 3D

    3D viewer which arranges BLAST hits and other bioinformatics-related alignments in a rotating, cylindrical display. Feedback appreciated. NOTE: requires Java3d installation. Superceded by Cylindrical Alignment App
    Downloads: 0 This Week
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  • 5
    BEYE (Binary EYE) is a free, portable, advanced file viewer with built-in editor for binary, hexadecimal and disassembler modes. It contains a highlight AVR/Java/i86-AMD64/ARM-XScale/PPC-64 and other disassembler, full preview of MZ,NE,PE,ELF and other.
    Downloads: 6 This Week
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  • 6
    AJT is a set of utility classes for Java for handling some bioinformatics data, graphics file export, GUI widgets, and classes that should long have been added to the official Java API.
    Downloads: 0 This Week
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  • 7
    Pilot's Charts iOS Aviation Chart Viewer

    Pilot's Charts iOS Aviation Chart Viewer

    FAA digital chart viewer for iPhone and iPad

    This project is for an iPhone/iPad viewer that is used to display FAA digital aviation charts. It also includes the support files necessary to prepare digital charts as downloadable tiles and a point of sale web site used by end users to obtain the charts. The viewer's features includes generating track points, which can be saved as GPX. The viewer can also be used to plot flights. The point of sale purchase system is Drupal based with a MySQL database. The remote device connects to...
    Downloads: 0 This Week
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  • 8
    gannu

    gannu

    Java API and tools for performing NLP and other AI tasks

    Java API and tools for performing a wide range of AI tasks such as: word sense disambiguation (released), optimization (5 Evolutionary Algorithms Implemented ETA February 2014), opinion mining (ETA November 2014) and text wikification (ETA July 2014). Gannu includes some graphical interfaces for scientific purposes. When using Gannu please cite: *Jiménez, F.
    Downloads: 0 This Week
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  • 9

    OpenME Interface

    simple event-based plugin interface to open up hardwired software

    ...For example, it is used to open up compilers (GCC, LLVM, Open64) for external tuning of optimization of internal heuristics, or to open up applications for online tuning and adaptation particularly on heterogeneous systems. It is based on successful Interactive Compilation Interface (ICI) which was added to mainline GCC >= 4.5. It supports C,C++,Fortran and Java. OpenME requires just one include file "openme.h" and 2 functions to register events or to have a call-back. The usage of this interface is briefly described in an open access publication available at http://arxiv.org/abs/1308.2410
    Downloads: 0 This Week
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  • 10
    Unsupervised TXT classifier

    Unsupervised TXT classifier

    Classify any two TXT documents, no training required - JAVA

    This program is made to address two most common issues with the known classifying algorithms. First, over-training and second, shortage of data for a training of categories. Instead, each TXT file is a category on its own, rather than an assigned category. In a way, this is similar to clustering but not really a clustering algorithm since there is some training involved. The summarizer from Classifier4J has been adjusted to accept two inputs (lets call them A and B). Then, the summarizer...
    Downloads: 0 This Week
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  • 11
    E.N.M.L. means Environmental Noise Model Language. The target of the project is the definition of a XML specification model mainly devoted to electronic acoustic data exchange. ENML aims to format ANY kind of noise measurement.
    Downloads: 0 This Week
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  • 12
    Easy Equations

    Easy Equations

    Hand Written Equation Creator

    Easy Equations is a utility using which one can write the mathematical equations. The focus of this utility is to provide user friendly access to write mathematical equations which is helpful for students, lecturers, mathematicians and Research persons who prefer using mathematical equations in a document, PowerPoint or web sites. Works on Windows as well as Linux platforms. Software Requirements: JDK 7 or higher. Linux Platform with kernel version 2.7 or higher.(for Linux users).python...
    Downloads: 0 This Week
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  • 13
    TF-IDF.jar is a Java Archive file to measure TF-IDF of each document in a document collection (corpus). The jar can be used to (a) get all the terms in the corpus (b) get the document frequency (DF) and inverse document frequency (IDF) of all the terms in the corpus (c) get the TF-IDF of each document in the corpus (d) get each term with their frequency (no. of presence), term frequency (TF) and TF-IDF in every document
    Downloads: 0 This Week
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  • 14

    Systems Glycobiology

    Glycosylation Network Analysis Toolbox (GNAT)

    GNAT is an open source, platform-independent MATLAB based toolbox. It is written in MATLAB and Java. It has been tested in Windows (Windows 7), Linux (Ubuntu), and Mac OS (X Lion) platforms. The original GNAT package (file GNAT.zip) provides functions for reading, writing, manipulation, visualization and simulation of glycan structures and glycosylation reaction networks (citation [1]). The second version of this software (GNATv2beta.zip) upgrades the original GNAT program with additional features that are geared towards incorporating glycan-structure experimental data into the simulation environment. ...
    Downloads: 0 This Week
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  • 15
    Specview is a Java GUI_based application for 1-D spectral visualization and analysis of astronomical spectrograms generated by a variety of observatories and instruments. Note that we no longer provide file distributions of this software. You are encouraged to visit the specview web site download page: http://www.stsci.edu/institute/software_hardware/specview/download to retrieve an installer appropriate for your platform.
    Downloads: 2 This Week
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  • 16

    ORIPA S

    A drawer for origami crease pattern

    ORIPA S is a drawing tool specifically designed for a origami crease pattern. It is derived from ORIPA which is developed by MITANI Jun. New features by ORIPA S are: - save current crease pattern as a image file (jpeg, png) not only original project file. - while pasting, select a point on pattern to be matched against destination point. - Some considerable bugs are fixed (i.e., wrong undo behavior on ORIPA v0.35). This program is free software: you can redistribute it and/or...
    Downloads: 6 This Week
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  • 17

    FishingCNV

    Copy number variation (CNV) detection in exome sequencing data

    FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases.
    Downloads: 0 This Week
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  • 18
    IMEP-Spice interface
    The developed graphical interface is based on the SKILL language which is a Lisp dialect used as a scripting language and PCell (Parameterized Cells) description language used in many EDA software suites by Cadence Design Systems.
    Downloads: 2 This Week
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  • 19
    RouteConverter is another route conversion tool. It helps me and I hope it could help you.
    Downloads: 0 This Week
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  • 20
    Myrtle

    Myrtle

    A simple programmable spreadsheet for learning statistics.

    Myrtle is a simple programmable spreadsheet and statistical analysis software specifically designed for learning statistics. It provides the standard spreadsheet functionality one would expect like multiple tabbed sheets, relative and absolute row and column referencing in formulas, and a large catalog of built-in functions. Functions specific to logic and computer science, mathematics, probability, and statistics are available. Student's can easily create, customize, and update plots and...
    Downloads: 0 This Week
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  • 21

    MSTParser

    MSTParser is a non-projective dependency parser that searches for maxi

    MSTParser is a non-projective dependency parser that searches for maximum spanning trees over directed graphs. Models of dependency structure are based on large-margin discriminative training methods. Projective parsing is also supported. mstparser 0.5.1 is now available via Maven Central. If you use Maven as your build tool, then you can add it as a dependency in your pom.xml file: <dependency> <groupId>net.sourceforge.mstparser</groupId> <artifactId>mstparser</artifactId> ...
    Downloads: 0 This Week
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  • 22

    GComb

    GComb is a gCode viewing tool with an interior focus

    GComb is an open-source quick and easy Java tool intended to ease the lives of all 3D printing hobbyists by providing a look inside a “sliced” GCode file and a better view of what is going to be printed, before it is printed. It works by parsing GCode files and producing an image for each layer of the printed object, any of which can then be viewed. GComb was originally written on Mac OS X using Eclipse with Java version 1.7.0_25, and was made for a Makerbot™ The Replicator Dual printing Skeinforge 50-generated GCode files. ...
    Downloads: 0 This Week
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  • 23
    DocCO

    DocCO

    Non-disjoint groupping of Documents based on word sequence approach

    This is a GUI for learning non disjoint groups of documents based on Weka machine learning framework. It offers the possibility to make non disjoint clustering of documents using both vectorial and sequential representation (word sequence approach based on WSK kernel). All data format supported by WEKA could be used in DocCO. Data could be loaded from files, from databases or from specified URL. All the preprocessing techniques implemented in WEKA could be used before performing the learning.
    Downloads: 0 This Week
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  • 24
    Atarrabi

    Atarrabi

    A web-based workflow application for publishing environmental data

    Atarrabi is a web-based workflow application used for preparing meteorological research data for persistent identifier registration. This software will not run out-of-the-box. Please visit our web site and contact us to learn more.
    Downloads: 0 This Week
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  • 25

    OMR Reader

    OMR Sheets Data Retrieval Software

    OMR Reader is an application to read data from scanned images of OMR sheets. You can first create a template for a particular form and save it as a .omr file. To create a template, use a form with all filled marks. The program will automatically detect the marks. Now choose the marks for a group, and name the group. Do this for all the option groups on the form. Now save the info of these groups in a .omr file. For different forms, you can have different .omr files. These files can later be...
    Downloads: 5 This Week
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