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OpenForecast is a package of general purpose, forecasting models written in Java that can be applied to any data series. No knowledge of forecasting is required. Using this package, the most appropriate algorithm for your data will be selected.
This project is a fork of the CERN Program Library is a large collection of general purpose libraries/ This program is oriented to needs of a physics laboratory that is general mathematics, data analysis, detectors simulation, data-handling etc...
The project have moved and is alive at http://opencernlib.tuxfamily.org/
HiC is high-throughput sequencing technology applied to chromatin conformation techniques. This collection of tools stream-lines the processing of HiC data from raw sequence to contact matrices and beyond.
CloudBurst is a parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.
General purpose discrete event simulation (DES) framework for the Python programming language. Khronos gathers ideas from other simulation software and tries to provide a simple and poweful toolset for simulation of discrete systems.
BIL++ is a set of standalone C++ packages for data processing in Bioinformatics (Graph mining, Bayesian networks, Genetic algorithm, Discretization, Gene expression data analysis, Hypothesis testing).
TIDAL is a collection of data acquisition and processing tools for
research in respiratory physiology. It provides a high-level language for specifying experimental protocols and required computations.
CPC Tools is a collection of open-source proteomics tools for use with mass spectrometry-based proteomics data sets. These tools were created by the Cardiovascular Proteomics Center of Boston University School of Medicine (Boston, MA).
STRAP (Software Tool for Rapid Annotation of Proteins) automatically annotates a protein list with information that helps to interpret mass spectrometry data.
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A collection of compact, powerful programs and functions, written in C, for the analysis and transformation of data. No object or structure dependencies, no fancy interfaces - just good tools.
GISpatialNet is a Java-based tool for mapping network data (nodes and edges between them) to spatial coordinates; reformatting network and spatial data together; and calculating spatial network measures.
Install by saving to c:\ drive and typing the following in a command line:
java -jar c:\GISpatialNet-0.9b.jar
DevLogger is a software framework used to collect, monitor, and log data from any number of instruments or input devices simultaneously. Initial support provides for serial connections to Radio Shack 22-812 multimeters and My Weigh HD Scales.
The TreeRank project is a R package implementing a Machine Learning algorithm to build tree-based ranking rules from data with binary labels, based on ROC optimization.
Logbus-ng consists in a set of tools to aid developers perform Log Analysis in all the stages: log generation, collection, distribution, storage and analysis. It is designed specifically for Field Failure Data Analysis in critical distributed systems
CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74
This project is to develop web applications and data integration functions to provide information on the collection records, ecology, geographic distribution, and taxonomic concepts of the vascular flora of the region.
A way to use XFOIL for airfoil analysis with MATLAB. Utilizes Perl to provide a pty to interface with XFOIL and to parse results to send back to MATLAB. "MatPerlXFOIL: Half MATLAB, Half Perl. Half XFOIL. EXELSIOR!"
A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
This project contains a collection of robotics algorithms and data-processing tools developed and maintained by researchers in the Stanford AI Laboratory (SAIL). The project uses the infrastructure provided by ROS to encourage modularity and reusabil
The SeismoWeb Toolbox is a collection of Matlab and Java tools providing access to seismological webservices. The current focus lies on the NERIES earthquake data portal, but it is intended to add more webservices in the future.
CEGA is a highly extendable layout plugin for Cytoscape based on an Evolutionary Algorithm. In contrast to other layout algorithms, CEGA lets users decide which features are important for the visualization of their graphs.
VidL is an online video and image annotation program that allows for the management of workers and data via a webserver. Annotate videos and images with meta data or other time related markers. Use include research datacollection and annotation, video i
SPASE Model is a collection of tools for working with the structured data model information. Tools can convert the relational version of the data model into various expressions, including XSD, XMI and PDF documentation.