Showing 208 open source projects for "gnu-efi"

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  • Eptura Workplace Software Icon
    Eptura Workplace Software

    From desk booking and visitor management, to space planning and office utilization data, Eptura Workplace helps your entire organization work smarter.

    With the world of work changed forever, it’s essential to manage your workplace and assets together to effectively create a high-performing environment. The Eptura experience combines the power of workplace management software with asset management, enabling you to effectively operate your building and facilitate hybrid work.
  • The Modern, Flexible, and Easy-to-use LIMS Icon
    The Modern, Flexible, and Easy-to-use LIMS

    For Laboratory Managers, Laboratory Directors, Laboratory Techs, Laboratory Operations Staff

    Run your entire lab more efficiently with our highly configurable and flexible LIMS. Automate your workflow to process more samples, generate reports faster, and grow your laboratory.
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    Waterloo

    Java-based scientific graphics

    Java-based scientific graphics with support for Java, Groovy, MATLAB, Python, the R statistical environment, Scala and SciLab.
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  • 2

    Corbata

    CORe microBiome Analysis Tools

    Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples.
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  • 3
    EricScript
    Ericscript is a computational framework to detect gene fusions from paired end RNA-seq data with high sensitity and specificity.
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  • 4
    IAP.G2P

    IAP.G2P

    IAP - the Integrated Analysis Pipeline

    The Integrated Analysis Platform (IAP) has been designed and developed to support the analysis of large-scale image data sets of different camera systems. It aims in bridging different data domains and in integrating different approaches to data analysis and post-processing.
    Downloads: 2 This Week
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  • Person-Level Website Visitor ID Icon
    Person-Level Website Visitor ID

    Get More Leads from Your Website

    Visual Visitor is a website lead generation and visitor tracking tool that identifies anonymous website visitors who are in the market for your services. With current research showing that only 2% of all web visitors will ever call or submit an email form, the data provided by Visual Visitor on the other 98% can be an invaluable sales tool for your business (or your customers' business).
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    CanReg5 (moved to Github)

    CanReg5 (moved to Github)

    Canreg5 is a software package for population based cancer registries

    Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry,...
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  • 6
    Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.
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  • 7
    HeatmapGenerator
    ... suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline." Source Code for Biology and Medicine, 2014 9:30] HeatmapGenerator source code is available at: https://github.com/Bohdan-Khomtchouk/HeatmapGenerator Bohdan Khomtchouk wishes to acknowledge the support of the Department of Defense (DoD) through the National Defense Science & Engineering Graduate Fellowship (NDSEG) Program. HeatmapGenerator is released under the GNU GPL.
    Downloads: 2 This Week
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  • 8
    hSDM

    hSDM

    R package for hierarchical species distribution models

    hSDM is an R package for hierarchical species distribution models. Such models allows interpreting the observations (occurrence and abundance of a species) as a result of several hierarchical processes including ecological processes (habitat suitability, spatial dependence and anthropogenic disturbance) and observation processes (species detectability). Hierarchical species distribution models are essential for accurately characterizing the environmental response of species, predicting their...
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  • 9

    Excelsi-R

    Excel's Interface to R

    Excelsi-R is an Excel add-in that allows Excel spreadsheets to harness the power of the R statistical language by connecting to a running R process. R does not need to be installed on the computer running Excel, but it does require access to an R instance running Rserve (which can be on a remote computer). It supports incorporating R plots and graphs in an Excel workbook.
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  • Manage queues and reduce operational costs Icon
    Manage queues and reduce operational costs

    Improve the waiting experience, gather service intelligence, and make data-driven decisions.

    Long queues cost businesses across the world trillions of dollars in lost sales. Customers who experience poor queuing are less likely to stay and recommend your business. Compare the performance of different locations and departments. Monitor the number of visitors waiting, average wait times, and other metrics. Give your staff the tools they need to supercharge your customer service. Recognize your team’s achievements and identify opportunities for growth. Easily measure and share performance results. Use service reports to keep track of KPIs and the effectiveness of service strategy. Eliminate in-person lines by allowing customers to join a virtual waitlist using their phones. Monitor your line in real-time. Let customers safely wait in their car, at home, or outside. Notify them when you are ready to serve them. Give customers regular updates and wait times. Make them feel like VIPs by talking to them directly and asking for their feedback.
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  • 11
    This is an R package for the Mass spectrometry Research. The MrR can be used to analyze the mass spectrometry data for baseline correction, denoising, peak detection, peak alignment, peak normalization, and biomarker discovery.
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  • 12
    ncPRO-seq

    ncPRO-seq

    Non-Coding RNA PROfiling from sRNA-seq

    ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in...
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  • 13
    ##### The RKWard project has moved! ##### Find the most recent news and downloads at http://rkward.kde.org . RKWard aims to provide an easily extensible, easy to use IDE/GUI for R. RKWard tries to combine the power of the R-language with the (relative) ease of use of commercial statistics tools.
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  • 14

    EDDA

    Experiment Design for Differential Abundance Analysis

    EDDA is a tool for systematic assessment of the impact of experimental design and the statistical test used on the ability to detect differential abundance. EDDA can aid in the design of a range of common experiments such as RNA-seq, ChIP-seq, Nanostring assays, RIP-seq and Metagenomic sequencing, and enables researchers to comprehensively investigate the impact of experimental decisions on the ability to detect differential abundance. More details of EDDA can be found at Luo, Huaien et al....
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  • 15
    NppToR: R in Notepad++

    NppToR: R in Notepad++

    NppToR provides R auto-completion and code passing between Notepad++ a

    Similar to the windows R gui built in editor, NppToR aims to extend the functionality of code passing to the Notepad++ code editor. In addition to passing to the R gui, NppToR provides optional passing to a PuTTY window for passing to an R instance a remote machine. Easy shortcuts are also provided for easy batch execution, with a monitor for longer running scripts.
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    Downloads: 61 This Week
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  • 16

    PyRate

    Bayesian Estimation of Speciation and Extinction from Fossil Data

    PyRate is a Python program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework. The method was described by D Silvestro, J Schnitzler, LH Liow, A Antonelli, and N Salamin in Systematic Biology (http://sysbio.oxfordjournals.org/content/early/2014/02/08/sysbio.syu006.abstract). *Please download the most up-to-date code from the "PyRate code" tab on this page or from: https://github.com/dsilvestro/PyRate * *An updated manual...
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  • 17
    The Dataverse Network is a Java EE5 app that enables researchers to share data on-line. It provides data citation standards, facilitates preservation, distribution and replication of data, and includes statistical analysis. More at: http://thedata.org
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  • 18

    NOFI ranking

    The Non-Outlier Fragment Ion ranking for enhaced DIA quantification

    The NOFI ranking algorithm has been developed to assign low priority to fragment ions affected by interference. The implementation is an R script that can be customized. A future version will contain a modular version. The outline is as follows: 1) The input contains the list of SWATH fragment ion XICs from the identified and quantified peptides by software tools such as Skyline and OpenSWATH. 2) The first step in NOFI is the computation of the 4 attributes (RTd, FWHMd, IRd and IRrep)...
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  • 19

    swathTUNER

    Software tool for optimizing data-independent acquisition methods

    SwathTUNER combines usability and flexibility for the selection of different SWATH data acquisition strategies to address the requirements of multiple experimental conditions. It can be used for any acquisition instrument, including FT-based analyzers, where the same principles with respect to variable precursor isolation windows apply. Fixed and variable windows based on equalizing the distribution of either the precursor ions or the total ion current within each window can be created.
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  • 20
    The Protein Similarity Network

    The Protein Similarity Network

    Human protein similarity network used to predict drug safety.

    This is the protein similarity network - PSIN. Here, the nodes are human proteins and they are linked only if they share considerable sequence similarity. We found that this network is particularly useful to distinguish approved from problematic drug-targets. Here you also find the complete set of programs and datasets we used for this purpose. Free to help further test and develop this project. Your help and expertise are much appreciated ! If you have any questions, please do...
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  • 21

    PS Matching in SPSS

    Propensity score matching in SPSS

    Propensity score matching in SPSS Provides SPSS custom dialog to perform propensity score matching. Using the SPSS-R plugin, the software calls several R packages, mainly MatchIt and optmatch. Proper citations of these R packages is provided in the program.
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    Downloads: 97 This Week
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  • 22
    Toolchain for quantification of fluorescence intensity and morphological parameters in single cells using microscope based cytometry.
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  • 23

    DEAPathways

    Differential Expression Analysis for Pathways

    This project contains the source code associated with the PLoS Computational Biology publication: "Differential Expression Analysis for Pathways". The paper text can be found here: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002967
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  • 24
    R-gregmisc is a set of extension package for the open-source statistical environment/language "R''. It includes functions for plotting (gplots), data manupulation (gdata), modeling (gmodels), and programming tools (gtools), creation and management of sub-processes (fork), determing sample sizes for -omics experiments (ssize), and a variety of other packages.
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  • 25
    Shoal

    Shoal

    A lot of fish in a shoal, in a gigantic scientific ocean.

    Ours organization website GCModeller.org is coming online soon! Shoal Shell is the sub project for the "genome-in-code"(http://code.google.com/p/genome-in-code/) virtual cell modelling project of the bacteria Xcc 8004. Shoal Shell aim at provide the modelling tool and the debugging tool for the GCModeller virtual cell modelling, And from the extendible library package, shoal shell can manage to accomplish the entire modelling job for any other bacteria species. Shoal Shell Project...
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