Search Results for "void based linux" - Page 2

Showing 82 open source projects for "void based linux"

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  • 1
    We developed a systematic algorithmic solution for quantitative drug sensitivity scoring (DSS), based on continuous modeling and integration of multiple dose-response relationships in high-throughput compound testing studies. License: The DSS R-package is made available under the terms of the GNU General Public License, which means that the source code is freely available for use within other software, but if you alter the code and distribute it, you must make the new source code...
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  • 2
    Community Detection Modularity Suite

    Community Detection Modularity Suite

    Suite of community detection algorithms based on Modularity

    - MixtureModel_v1r1: overlapping community algorithm [3], which includes novel partition density and fuzzy modularity metrics. - OpenMP versions of algorithms in [1] are available to download. - Main suite containing three community detection algorithms based on the Modularity measure containing: Geodesic and Random Walk edge Betweenness [1] and Spectral Modularity [2]. Collaborator: Theologos Kotsos. [1] M. Newman & M. Girvan, Physical Review, E 69 (026113), 2004. [2] M....
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  • 3
    An open-source implementation of our network-based target deconvolution approach, named target addiction score (TAS). License: The TAS R-package is made available under the terms of the GNU General Public License, which means that the source code is freely available for use within other software, but if you alter the code and distribute it, you must make the new source code freely available as well. This software is distributed in the hope that it will be useful, but WITHOUT ANY...
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  • 4

    Waterloo

    Java-based scientific graphics

    Java-based scientific graphics with support for Java, Groovy, MATLAB, Python, the R statistical environment, Scala and SciLab.
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  • 5
    CanReg5 (moved to Github)

    CanReg5 (moved to Github)

    Canreg5 is a software package for population based cancer registries

    Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry,...
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  • 6
    The Dataverse Network is a Java EE5 app that enables researchers to share data on-line. It provides data citation standards, facilitates preservation, distribution and replication of data, and includes statistical analysis. More at: http://thedata.org
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  • 7

    swathTUNER

    Software tool for optimizing data-independent acquisition methods

    SwathTUNER combines usability and flexibility for the selection of different SWATH data acquisition strategies to address the requirements of multiple experimental conditions. It can be used for any acquisition instrument, including FT-based analyzers, where the same principles with respect to variable precursor isolation windows apply. Fixed and variable windows based on equalizing the distribution of either the precursor ions or the total ion current within each window can be created.
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  • 8
    The Protein Similarity Network

    The Protein Similarity Network

    Human protein similarity network used to predict drug safety.

    This is the protein similarity network - PSIN. Here, the nodes are human proteins and they are linked only if they share considerable sequence similarity. We found that this network is particularly useful to distinguish approved from problematic drug-targets. Here you also find the complete set of programs and datasets we used for this purpose. Free to help further test and develop this project. Your help and expertise are much appreciated ! If you have any questions, please do...
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  • 9
    Toolchain for quantification of fluorescence intensity and morphological parameters in single cells using microscope based cytometry.
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  • 10

    SuRankCo

    Supervised Ranking of Contigs in de novo Assemblies

    SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet. For more details about SuRankCo and its functioning, please see "SuRankCo: Supervised Ranking of Contigs in de novo Assemblies" Mathias Kuhring, Piotr Wojtek Dabrowski, Andreas Nitsche and Bernhard Y....
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  • 11

    DESN

    Differential activE sub-Network (DEN): R/Bioconductor based package

    Living cells are complex, dynamic, self-regulatory, interactive systems, showing differential states across time and space. Complexity of cellular systems is highlighted with the multi-layered regulatory mechanisms involving the interactions between bio-molecules (such as DNA, RNA, mi-RNA and proteins). These interactions are analyzed in the form of static networks. Likewise, number of experimental techniques like microarray, RNASeq allows quantification of cellular dynamics and aid in...
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  • 12

    BeerFest DB

    Beer festival cellar management database and related software.

    The BeerFest DB project will be designed as a reusable software package to help organize beer festivals and record information concerning past events. Initially it will focus on tracking cask information (e.g., ordering, sales, quality control).
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  • 13

    Digital Expression on the Web

    DEW is a platform that allows users to explore RNA-Seq data

    DEW is a platform that allows users to explore RNA-Seq data. A web-based Graphical User Interface is included. The analysis proceeds as such: gapped alignments are performed and corrected for length, PCR and fragment bias so that a Fragment Per (effective) Kilobase per Million of reads (FPKM) is estimated as well as the simpler Reads Per Kb per Million of reads (RPKM). When provided with multiple isoforms and in the ‘contextual’ mode, corrections include a expectation maximization...
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  • 14
    An implementation of the Kernel-based Orthogonal Projections to Latent Structures (K-OPLS) method for MATLAB and R. The supplied functionality includes e.g. cross-validation, kernel parameter optimization, model diagnostics and plot tools.
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  • 15
    QUASI is a toolkit to rapidly assess the quality of shRNA-Seq based data and call differential abundance using common statistical inference methods (DESeq, edgeR, baySeq).
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  • 16

    IQuant

    A pipeline for quantitative proteomics based upon isobaric tags

    IQuant is an automated pipeline for quantitative proteomics based upon isobaric tags. It integrates post-processing tool of protein identification and advanced statistical algorithms to process the MS/MS signals generated from the peptides labeled by isobaric tags for quantification. IQuant can run from a graphical user interface (GUI) as well as a command-line interface and work with both Windows and Linux system.
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  • 17
    SimiTriX-SimiTetra

    SimiTriX-SimiTetra

    Similarity, Comparative genomic, Visualization, Eclipse RCP, SimiTri

    This application system is based on Eclipse RCP, and it uses the JFreeChart and JOGL library to implement the chart drawing and OpenGL. There are some scripts to generate similarity data for main application and to analysis result. It is an useful tool to visualize relative similarity relationship between different datasets.
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  • 18

    WATSpackage

    R package for acoustic-assisted whale survey simulation

    WATS is an R package (>R2.15) whose main purpose is to run an individual-based simulation of an acoustically-assisted mark-recapture survey of whales Version 1.0 = for R2.15.x Version 1.01 = for R3.0.3+ For details see: Peel D, Miller BS, Kelly N, Dawson S, Slooten E and Double MC (2014) A simulation study of acoustic-assisted tracking of whales for mark-recapture surveys. PloSOne in press.
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  • 19
    GISBox by Citiviz

    GISBox by Citiviz

    Ready-to-use appliance for GIS, Data Mining and Analysis, Modelling...

    GISBox by Citiviz is a ready-to-use virtual appliance containing an assortment of powerful, free and open source GIS, Data Mining and Analysis, Modelling and Programming software and packages. The pre-configured and tested GISBox allows you to try and use in few minutes a variety of software used by data scientists, engineers, physicists, mathematicians, geomatics engineers, and geographers from around the globe, without installing anything more than once the Oracle VirtualBox™ software...
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  • 20
    ClinStudyWeb is designed to provide a flexible infrastructure for managing patient and assay data from clinical studies. It uses a plugin system for study-specific web forms and arbitrarily complex test classifiers, and supports XML import/export.
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  • 21

    Weibull-based reliability toolkit for R

    R package for Weibull analysis on (life-)time observations.

    This is a small R package for doing Weibull-based reliability analysis. This R package is now obsolete and has been superseded by 'project Abernethy' on http://r-forge.r-project.org/projects/abernethy/.
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  • 22
    MyNook

    MyNook

    A machine learning system for supervised document classification

    An open source system for supervised document classification based on statistical machine learning techniques. On the contrary of the state of art classification techniques, MyNook just requires the title of the document, not the content itself.
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  • 23

    Pop-seq

    Population simulator to solve next generation sequencing questions

    Pop-seq is a perl based simulation tool, for generating any kind of mapping population using an user defined recombination landscapes. Combined with the Seq-sim tool you can generate pooled or bar-coded next generation sequencing biased outcomes. This tool were used to solve reappearing question in a experimental design (e. g. of how many plants or sequencing depth is advisable in a back crossed or out crossed scenario )
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  • 24
    GEPETTO - Gene Prioritization in Java

    GEPETTO - Gene Prioritization in Java

    GEPETTO (GEne Prioritization ExTended TOol)

    GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein...
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  • 25

    SPA - SNP based pathway analysis

    SNP based pathway analysis

    Name: SPA Full name: SNP based pathway analysis Maintainer: jiangyongshuai@gmail.com liuguiyou1981@163.com Language: R package Description: SPA is an R package which can identify disease or phenotype related pathways. Input rs# and GWAS test p-values, you can get the related pathways.
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