Search Results for "research"
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Showing 128 open source projects for "research"
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Secure File Transfer for Windows with Cerberus by RedwoodCerberus supports unlimited users and connections on a single IP, with built-in encryption, 2FA, and a browser-based web client — all deployable in under 15 minutes with a 25-day free trial.
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Ship Agents FasterGemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
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VYM (View Your Mind) is a tool to generate and manipulate maps which show your thoughts. Such maps can help you to improve your creativity and effectivity. You can use them for time management, to organize tasks, to get an overview over complex contexts
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KaNaPi
Educational Linux Distribution
Main goals: * Prepare operating system based on Linux kernel and free software for use at home from scratch by building sources. Binary packages/images are also available. * Each package is installed in separate directory, so you can use different versions of applications and libraries by design. * There is only one user 'kanapi' with root permissions, so you don't have to login, remember passwords, etc. * Simple configuration * Automatic compilation. -
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VK_Periodic_Table_branch_mmmv
Periodic Table of Chemical Elements that requires an HTTP server.
A shallow fork of https://github.com/valter1977/Pertable/ with all goodies from upstream and most flaws/bugs by me. The Periotic Table of Chemical Elements has been implemented at upstream by Valter Kiisk https://kodu.ut.ee/~kiisk/pertable/pertable.htm and its technology is HTML+CSS+JavaScript. The JavaScript downloads data at runtime, so a HTTP server is needed to view that table of chemical elements. The HTTP server has been bundled to this project. -
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Systems Biology Markup Language (SBML)
A file format for exchanging computational models in systems biology
The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more. -
Fully Managed MySQL, PostgreSQL, and SQL ServerCloud SQL handles your database ops end to end, so you can focus on your app.
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academic
A Jekyll theme for academia
A Jekyll theme designed for academia, although you can use it for almost any other purpose as well. -
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The Phenoscape project attempts to formalize the description of evolutionary characters to make them interoperable and computable with the body of phenotype annotation being generated by model organism databases, and other biomedical research.
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miRprimer
Automatic design of primers for miR-specific RT-qPCR
miRprimer designs primers for PCR amplification of microRNAs as described (Busk (2014). A tool for design of primers for microRNA-specific quantitative RT-qPCR. BMC Bioinformatics. 15, 29) for use with the method miR-specific RT-qPCR (Cirera, S., and Busk, P.K. (2014). Quantification of miRNAs by a simple and specific qPCR method. Methods in Molecular Biology. 1182, 73-81.). The program was written in Ruby and is available as source code for developers and as an .exe file for easy use. -
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DAMIAN
Identification of pathogenic microorganisms in diagnostic samples
DAMIAN provides capabilities to detect known and novel pathogens in RNA and DNA samples of various sources. It integrates all required processing steps, ranging from the quality control of sequencing reads to the generation of comprehensive reports. The method works for any host organism. -
Custom VMs From 1 to 96 vCPUs With 99.95% UptimeLive migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.
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sciNote
Open source electronic lab notebook (ELN) for scientists
sciNote is an open source electronic lab notebook (ELN) that helps you manage your laboratory work and stores all your experimental data in one place. sciNote is specifically designed for life science students, researchers, lab technicians and group leaders. -
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Decentralized Internet
SDK for building decentralized web and distributed computing projects
This project was created in order to support a new internet. One that is more open, free, and censorship-resistant in comparison to the old internet. An internet that eventually wouldn't need to rely on telecom towers, an outdated grid, or all these other "old school" forms of tech. We believe P2P compatibility is an important part of the future of the net. Grid Computing also plays a role in having a better means of transferring information in a speedy, more cost-efficient and reliable manner. -
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deep2Read
This website includes a (growing) list of papers and lectures
...To educate students in our graduate programs, to help new members in my team with basic tutorials, and to help current members understand advanced topics better, this website includes a (growing) list of tutorials and papers we survey for such a purpose. We hope this website helps people who share similar research interests or those interested in learning advanced topics about deep learning. -
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Finita
Package for solving PDE systems numerically
Finita is a software package for solving complex algebraic/differential systems of equations numerically using various grid methods. -
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SODE
Program to solve differential equations using long Taylor series
Program to generate a program to numerically solve either a single ordinary differential equation or a system of them.It is a Ruby program, now called omnisode, which generates either Ruby, C, C++, Maple or Maxima code. Code can be generated for all languages under Linux. Ruby can be generated under Windows. All can be generated under cygwin, but would need work on execution of Maple. Omnisode itself is Ruby, which is needed in all cases to generate the program. -
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Spark is a physical simulation system. The primary purpose of this system is to provide a *generic* simulator for different kinds of simulations. In these simulations, agents can participate as external processes.
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are... -
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CanReg5 (moved to Github)
Canreg5 is a software package for population based cancer registries
Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry,... -
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Atlas is a suite of variant analysis tools specializing in the separation of true SNPs and insertions and deletions (indels) from sequencing and mapping errors in Whole Exome Capture Sequecing (WECS) data.
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CRAFT HPC Floating-point Analysis
CRAFT: Configurable Runtime Analysis for Floating-point Tuning
CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft -
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Meta Tag Generator. Allows you to research SEO keywords generate proper compliant meta tags and output them to a HTML or text file for insertion into a finished web project.
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LightSpeedANN
Generator for optimized, vectorized neural net code
This Ruby program takes in a topology specification for an artificial neural network and emits optimized C code (using SSE intrinsics) that implements fast forward and backward propagation for that specific topology. -
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QMachine
A platform for World Wide Computing
QMachine (QM) is a web service for distributed computing. Its design relaxes the usual requirements of a distributed computer so far that it can be powered completely by web browsers – without installing anything. -
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Valence
Fast, Dynamic, and Extendable/Mergeable Workflow Management System
Agile protocol development and workflow management of pipelines. Simple enough for a low barrier of entry, but powerful enough to manage large procedures. Includes APIs in Python, Ruby, Java, and Perl to assist in the creation of Drivers that can create new workflows on the fly. Greatly facilitates merging and extending pipelines between groups/developers.
