Open Source Perl Research Software

Apellicon is a web-based administration suite for Textpresso. Textpresso is an open-source text-mining system for scientific literature. Apellicon implements all of the steps required to build and maintain a Textpresso database.

This software is a Perl Catalyst based electronic lab notebook (ELN) aiming for small biologic laboratories, that have no funding to invest into a closed source ELN.

Various tools for creating annotated parallel corpora including pre-trained tagging and parsing models for various languages, sentence alignment tools and word alignment tools. Uplug also includes a web-based interface for interactive sentence and word alignment and scripts for indexing and querying parallel corpora using the Corpus Work Bench CWB. Download 'uplug-main' first and then add other packages.

The Document Availability Information Ontology (DAIA) describes the current availability of documents in libraries and similar institutions. Availability can be expressed in terms of specific services. See http://purl.org/NET/DAIA for a specification

IMP is an automated tool for intron-flanking primer design based off of Expressed Sequence Tags (ESTs). It's intended for use in species with limited to no genomic sequence data available.