Open Source Java Research Software - Page 4

REPEATS is a bioinformatics software designed to help biologists to analyze sequence - either nucleotide or protein - for interspersed repeats. It offers functionalities to manage sequence data, analyze and store search results for further analysis.

RSSceSim is a simple and easy to extend simulation tool for reputation models that can be used for testing, comparing and benchmarking reputation system metrics under specific scenarios.

Java library for Relationship Based Access Control (ReBAC). Provides a general framework creating ReBAC policies and model checking. Also provides tools for testing. Obtain latest version as a Maven Dependency: <dependency> <groupId>ca.ucalgary.ispia</groupId> <artifactId>rebac</artifactId> <version>0.1.7</version> </dependency>

converting java recursive methods to iterative ones. for educational purposes ,i didn't say much about the algorithm because this can be an interesting field of research for B.S. students.

Running Reality no longer uses SourceForge. Visit us at our homepage! We at Running Reality believe that we can use the power of today's computers and mobile devices to bring history to life in an accessible, immersive, and engaging way for K-12 students, history enthusiasts, and visitors to historical sites. Running Reality gives you a map that lets you go any place on any date from 3000BC to today and explore down to the street-level of history. This model has nations and cities but also ships, armies, buildings, and people. Towns grow, buildings are constructed, ships explore new seas, and armies battle. Harbors silt in, rivers change course, and cities are sacked and burned. When you are standing at a historical site and using your mobile phone, you can see all the events that happened around you at that exact spot then zoom out to see the context of what was happening more globally.

SIMACT is a 3D smart home simulator for activity recognition developped at LIARA during the summer 2009. The goal of SIMACT is to enable scientist to simulate execution sequence of activity inside a smart home to conduct their research.

Facilitates data mining/natural language processing experiments to be executed on weblogs, such as classification, clustering and rating. As part of these experiments, it is possible to apply Latent Semantic Analysis.

This project defines the Simple API for Binary REpresentations (SABRE) for processing hierarchically structured, binary-oriented documents, comparable to the Simple API for XML (SAX). The library is e.g. used in the Java ISO Image Creator (JIIC).

Swarm framework for chemicals, to neurons, to group models and species models and etc. I will try to keep one version of the code independent of any platforms, but I will also be integrating the code with JADE, JBoss and my software.

Java 8+ required. Collection of tools to help generate artificial Whole Slide Images (WSIs). A WSI is stored as a ZIP archive of JPG tiles, and this software contains a tool to visualize this format. SVS files can be used directly for texture extraction (thanks to the included Bio-Formats library). Main source files in package fr.unistra.wsi.synthetic.

TIM - The Intelligent Machine, Robot project developed by TIT06ANS at the DHBW Mannheim

TML has moved to http://www.villalon.cl/tml.html and the code to https://github.com/villalon/tml

This project is ANDS (Australian National Data Service) funded and aims to provide a mechanism for researchers within the University of Western Australia to upload research datasets to a central petastore. It also aims to publish metadata about the datasets to RDA (Research Data Australia) so that the datasets can be discovered (and potentially shared) by searching or browsing through the ANDS website. In order to accomplish the above functionality, this project used the following open source code and customised it as necessary. - Vivo (configured for UWA but no code changes) - DSpace (significantly customised) - iDrop upload tool (significantly customised) - JDownloadManager (again, significantly customised) The package in this SourceForge project contains our customised version of DSpace, iDrop and JDownloadManager. In our solution iDrop and JDownload manager are modified to interface with DSpace and do not operate on their own. For backend storage we are using iRods.

Webtracks’ objective is to develop an approach and mechanism for constructing and propagating structured information to describe the linkage between distributed research objects in the context of academic activities.

YANG (Yet Another Network Generator - Java) enables you to generate social networks given various social rules observed in the real population. Uses: generate realistic networks to be used in individual-centric models, teaching or benchmarking.

Acoma process email communication on server or desktop side and attach relevant information from various sources to an email messages. It can be used within any email client or mobile device since it is hooked up to email as a proxy to SMTP or POP3.

Alfresco tutorial with maven structure.

Complex Systems Tools

dwos is a distribute WEB-desktop OS. It mainly contains a WEB desktop environment, a chat-online system, a network disk system, a Scientific Computing platform(developing) and so on. It is developed by JAVA language using the JSH(JSF+Spring+Hibernate) framework. After about half year testing, now it's open source, you can download it and run on your computer, Tomcat and jetty server container are tested ok. It's developed by myself, more about me, see here: http://home.ustc.edu.cn/~chh1990/chero/chero.html

Create hexagon-based mind maps with content-related suggestions retrieved from the Internet.

Library for fingerprinting (decomposition) of chemical compounds. It has several tweaking possibilities and exporting options for data mining toolkits.

A computer program for a fast and accurate determination of Sb/(Sb+As) content ratio in the tetrahedrite-tennantite and bournonite-seligmannite solid solution series by at least one spectral parameter (band position or relative intensity) of their Raman spectra.

Java Voice Control System

JMathStudio is a Java based digital image and signal processing toolkit/library. It is simple to use, portable, light (~300 Kb), extendable and free. Full source code available at https://github.com/bhavyaajani/jmathstudio Android compatible JMathStudio is available @ https://sourceforge.net/projects/jmathstudio-android/

A tutorial I use for getting a jump start on lucene usage throughout my projects.