Open Source Java Research Software - Page 3

Este projeto visa criar um sistema para gerenciamento de grupos de pesquisa para a disciplina IN980-Topicos Avancados em Eng. de Software (Reuso Estrategico em Linhas de Produtos de Software). Disciplina ofertada em 2010.01 no Cin-UFPE.

Java generic API for search algorithms on graphs implicitly given by tree node expansion operator

Aim is to extract the information from the cadastral maps which is stored as scanned images. The extracted information is stored using graph representation. Then we convert these infomation in to CityGML format to visualize and communicate.

Java-based Image Server engine to organise high resolution images. The intermediate images will be generated transparently and available through defined URLs. The aim is to extended to Digital Asset Management Server

This is a project which contains solutions for most important problems in Java development and it can be used by everybody.

Kemet API is a Java library which introduces the transcription and transliteration of egyptian hieroglyphs based on the list of Gardiner's signs (middle egyptian). Kemet API is a part of Kemet project - Art and Culture - Archeology - Egypt

KemetLF is a Java/Swing library + DEMO which defines the Look and Feel of kemet project. This library which introduces the transcription and transliteration of egyptian hieroglyphs based on the list of Gardiner's signs (middle egyptian) - Art and Cu

The project contains algorithms for locating the most central groups in complex networks. In particular implementations of various centrality measures and heuristic search algorithms. All functionality is exposed via XML-RPC for easier exploitation.

A software tool enabling the user to browse through an image stack created by a confocal microscope. Points can be plotted through the stack, producing a digital 3D representation, which can be viewed in 3D and compared with other plots.

A system to perform analysis of large documents for the purpose of cataloging similar documents. Similarity is based upon contextual analysis of these documents done by identifying common words and proper nouns.

A standards-compliant bibliography generator, focusing on efficiency. Type your many references' details easily with keyboard navigation and let Loc Cit format and sort them in to a ready to copy list, of the standard of your choice.

We are developing MIRACH, a Statistical Online Model Checker for Biological Pathway Models, based on the PLTLs formalism for expressing the rules/properties to be checked. MIRACH can currently check pathways models written either in CSML or SBML.

A toolkit to aid the process of Systematic Review and Systematic Mapping Study.

Maui is a multi-purpose automatic topic indexing algorithm. Given a document, Maui automatically identifies its topics. Depending on the task topics are tags, keywords, keyphrases, vocabulary terms, descriptors or Wikipedia titles.

The purpose of MoRe4ABM - Managing Ongoing RElationships for ABM - is to support representing and analysing social networks in agent-based modeling. The library provides a large number of network generators and a comprehensive framework for network and node level measures. It integrates well with Repast Simphony and uses the JUNG library. More4ABM furthermore supports initialisation of geographically explicit networks using GIS.

This research project seeks to use compiler techniques to perform an attribute-based data-flow analysis on (MOF/UML)models allowing for a syntax-driven validation of a model's static semantics as well as an abstract interpretation of i dynamic behavior.

XY modular Polynom manipulation in Java for calculating elliptic curves point order

Journal article to cite: Jahnke, G.; Smidla, J.; Poczai, P. MolMarker: A Simple Tool for DNA Fingerprinting Studies and Polymorphic Information Content Calculation. Diversity 2022, 14, 497. https://doi.org/10.3390/d14060497 Leave a review, please! Your opinion matters! :-) MolMarker is user-friendly software to help evaluate the research results obtained by molecular markers. The software can handle genetic (e.g. SSR) and biochemical (e.g. isozyme) data, can construct similarity matrices and UPGMA or NJ dendograms. It can calculate the frequencies of null alleles in the case of genetic data as well as H (heterosigosity) and PIC (polymorphic Information Content) values. Parentage analyses gives a list of possible parent-offspring combinations, and likelihood ratio statistics corresponding to the detected combinations. For details see MolMarker Manual.pdf

NeISS (National e-Infrastructure for Social Simulation) is a JISC funded project which will produce a platform for social simulation. Project Web site: http://www.neiss.org.uk

Neural objectz is a java code (no executable) that uses (a lot) of neurons that work more object oriented then the classical mathematical neural networks who use mathematical functions to calculate their output out of input.

The Java class library, that contains classes for calculation of different mathematical relations between object and number sequences and sets: Kendall distance, Spearman distance, similarity measure, L1 distance and others.

Modular application for biomedical data processing.

The Open Library Mangement System is a project to create a web based system to help mange library's everywhere.

OrthoInspector is a new software system for orthology/paralogy analysis. Its purpose is to facilitate the installation and the maintenance of a database describing orthology/inparalogy relations and to provide tools to exploit these data.

ParMa provides several ways to define and read parameter settings for ABM ant therefore facilitates the organisation of model parameter settings.