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Showing 14 open source projects for "linux file parser"
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targets
Function-oriented Make-like declarative workflows for R
The targets package is a pipeline / workflow management tool in R, designed to coordinate multi‐step computational workflows in data science / statistics. It tracks dependencies between “targets” (computational steps), skips steps whose upstream data or code hasn’t changed, supports parallel computation, branching (dynamic generation of sub‐targets), file format abstractions, and encourages reproducible and efficient analyses. It’s something like GNU Make for R, but more integrated. Skipping... -
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workflowr
Organize your project into a research website
workflowr is an R package that helps researchers organize, version, and share their data science projects in a reproducible and transparent manner. It combines R Markdown, Git, and a structured file system to create a research website that tracks analysis, results, and code changes over time. It’s ideal for academic and collaborative research workflows. -
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gt R
Easily generate information-rich, publication-quality tables from R
With the gt package, anyone can make wonderful-looking tables using the R programming language. The gt philosophy: we can construct a wide variety of useful tables with a cohesive set of table parts. These include the table header, the stub, the column labels and spanner column labels, the table body, and the table footer. It all begins with table data (be it a tibble or a data frame). You then decide how to compose your gt table with the elements and formatting you need for the task at... -
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lintr
Static Code Analysis for R
lintr is a static code analysis tool for R that identifies syntax errors, style inconsistencies, and other potential issues in R scripts and packages. It supports customizable lint rules and integrates with many editors to provide realtime feedback and enforce coding standards (e.g., tidyverse style). -
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5
data.table
Extends base R’s data for high-performance data manipulation
data.table is an R package that extends base R’s data.frame for high-performance data manipulation. It offers concise syntax, blazing speed, and memory-efficient operations. It supports fast file reading/writing, joins, grouping, reshaping, and updates by reference. It is heavily used in large data workflows, big data in R, production pipelines, etc. Extremely efficient grouping/aggregation/summarization; can handle very large datasets (hundreds of millions to billions of rows) in memory (if... -
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box
Write reusable, composable and modular R code
box is an R package providing a modular system / module loader for organizing reusable R code outside of full packages. It allows users to treat R scripts (files/folders) as modules — possibly nested — with explicit exports, imports, and scoping. The idea is to let users structure code in a more modular, composable way, without needing every reusable component to be a full CRAN-style package. It also provides a cleaner syntax for importing functions or modules (via box::use) that allows... -
7
osm4scala
Reading OpenStreetMap Pbf files.
Scala and polyglot Spark library (Scala, PySpark, SparkSQL, ... ) focused on reading OpenStreetMap Pbf files. -
8
generativeart
Create Generative Art with R
generativeart is an R package for creating algorithmic art by computing the positions of many thousands of points according to user-defined mathematical formulas with randomized parameters. Each render uses a seed to introduce controlled randomness, so every image is unique while remaining reproducible when the same seed and formula are reused. The package logs the seed, formula, and file name to a CSV, which makes it easy to catalog outputs, re-generate favorites, and track experiments. A... -
9
MitoSAlt
Identification of mitochondrial structural alterations
MitoSAlt is a pipeline to identify large deletions and duplications in human and mouse mitochondrial genomes from next generation whole genome/exome sequencing data. The pipeline is capable of analyzing any circular genome in principle, as long as a proper configuration file is provided. -
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Harmony Data Integration
Fast, sensitive and accurate integration of single-cell data
Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. Harmony has been tested on R versions =4. Please consult the DESCRIPTION file for more details on required R packages. Harmony has been tested on Linux, OS X, and Windows platforms. -
11
Open Intro Statistics
An open-source textbook written at the college level
OpenIntro Statistics is a dynamic take on the traditional curriculum, being successfully used at Community Colleges to the Ivy League. Each chapter's content is in one of the eight chapter folders that start with "ch_". Within each folder, there is a "figures" folder and a "TeX" folder. The TeX folder contains the text files that are used to typeset the chapters in the textbook. In many cases, R code is supplied with figures to regenerate the figure. It will often be necessary to install the... -
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sf (Simple Features)
Simple Features for R
sf is an R package that implements “simple features” (standardized vector spatial data) for R. It allows spatial vector data (points, lines, polygons etc.) to be represented as records in data frames (or tibbles) with geometry list columns, and performs spatial operations (geometry operations, coordinate reference system transformations, reading/writing spatial data, integration with spatial databases etc.). It interfaces to GDAL, GEOS, PROJ libraries for robust operations. Reading and... -
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DataScienceR
a curated list of R tutorials for Data Science, NLP
The DataScienceR repository is a curated collection of tutorials, sample code, and project templates for learning data science using the R programming language. It includes an assortment of exercises, sample datasets, and instructional code that cover the core steps of a data science project: data ingestion, cleaning, exploratory analysis, modeling, evaluation, and visualization. Many of the modules demonstrate best practices in R, such as using the tidyverse, R Markdown, modular scripting,... -
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RNAseq Tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud
rnaseq_tutorial is a tutorial and educational resource created by the Griffith Lab that guides users through the steps of RNA-seq data analysis. It includes working pipelines for alignment, differential expression, alternative splicing, visualization, and interpretation. It is designed to run in the cloud or local environments, providing introductory material on file formats, reference genomes / annotation, QC, mapping, quantifying expression, visualizing results, etc. The version in that...
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