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Showing 16 open source projects for "high"
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data.table
Extends base R’s data for high-performance data manipulation
data.table is an R package that extends base R’s data.frame for high-performance data manipulation. It offers concise syntax, blazing speed, and memory-efficient operations. It supports fast file reading/writing, joins, grouping, reshaping, and updates by reference. It is heavily used in large data workflows, big data in R, production pipelines, etc. Extremely efficient grouping/aggregation/summarization; can handle very large datasets (hundreds of millions to billions of rows) in memory (if available). ... -
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ggpubr
'ggplot2' Based Publication Ready Plots
ggpubr is an R package that provides easy-to-use wrapper functions around ggplot2 to create publication-ready visualizations with minimal code. It streamlines plot creation for researchers and analysts, allowing features such as statistical annotation, theme customization, and plot arrangement with fewer lines of code. -
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easystats
The R easystats-project
easystats is a meta‑package that installs and unifies a suite of R packages for post‑processing statistical models. It delivers a consistent API to assess model performance, effect sizes, parameters, and to generate reports and visualizations, all with minimal dependencies and maximum clarity. -
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clusterProfiler
A universal enrichment tool for interpreting omics data
clusterProfiler is an R/Bioconductor package that provides a unified workflow for functional enrichment analysis to interpret high-throughput omics results. It supports both over-representation analysis and gene set enrichment analysis, letting you work with unranked gene lists or ranked statistics from differential pipelines. The package connects to multiple knowledge bases—such as Gene Ontology, KEGG, Reactome, Disease Ontology, MeSH and others—through a consistent interface so you can query different biological lenses without rewriting code. ... -
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paletteer
Collection of most color palettes in a single R package
paletteer is an R package by Emil Hvitfeldt that aggregates color palettes from many other R packages, providing a unified, streamlined interface to access discrete, continuous, and dynamic palettes. It is intended to simplify choosing color schemes when plotting, remove the friction of remembering different palette package APIs, and make high‐quality color aesthetics more accessible. Some palettes change depending on the number of colors requested; the ability to reverse palettes. Support both discrete palettes (fixed number of colors) and continuous palettes (interpolated). -
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rayshader
R Package for 2D and 3D mapping and data visualization
...At its core, rayshader takes a matrix of elevations and applies shading, texture, ambient occlusion, overlays, and light modeling (ray shade, lambertian shading, etc.) to produce realistic relief maps. Users can rotate, zoom, and animate the scenes or script camera trajectories programmatically. It supports outputting high-quality renders via path tracing (using a companion package) and also offers depth-of-field (“cinematic blur”) effects to bring visual focus into scenes. It allows layering relational data (roads, points, polygons) on top of the shaded terrain, so you can combine spatial data overlays with the 3D model. The package can export models to 3D formats like STL or OBJ for 3D printing or external rendering. -
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future
R package: future: Unified Parallel and Distributed Processing in R
...It allows R expressions to be scheduled for future evaluation, with the result retrieved later, in a way decoupled from the specific backend used. This lets code be written in a way that works with sequential execution, multicore, multisession, cluster, or remote compute backends, without changing the high-level code. It handles automatic exporting of needed global variables/functions, managing of packages, RNG, etc. Automatic detection and export of global objects and functions needed by future expressions, so the user doesn’t need to manage that manually. Ability to control how futures are resolved. -
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brms
brms R package for Bayesian generalized multivariate models using Stan
brms is an R package by Paul Bürkner which provides a high-level interface for fitting Bayesian multilevel (i.e. mixed effects) models, generalized linear / non-linear / multivariate models using Stan as the backend. It allows R users to specify complex Bayesian models using formula syntax similar to lme4 but with far more flexibility (distributions, link functions, hierarchical structure, nonlinear terms, etc.). -
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nichenetr
NicheNet: predict active ligand-target links between interacting cells
...NicheNet prioritizes ligands according to their activity (i.e., how well they predict observed changes in gene expression in the receiver cell) and looks for affected targets with high potential to be regulated by these prioritized ligands. -
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LabPlot
Data Visualization and Analysis
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. -
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MetEx
MetEx is a computational tool for metabolite targered extraction and a
Liquid chromatography–high resolution mass spectrometry (LC-HRMS) is the most popular platform for untargeted metabolomics methods, but annotating LC-HRMS data is a long-standing bottleneck that we are facing since years ago in metabolomics research. A wide variety of methods have been established to deal with the annotation issue. To date, however, there is a scarcity of efficient, systematic, and easy-to-handle tools that are tailored for metabolomics and exposome community. ... -
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OmicSelector
Feature selection and deep learning modeling for omic biomarker study
OmicSelector is an environment, Docker-based web application, and R package for biomarker signature selection (feature selection) from high-throughput experiments and others. It was initially developed for miRNA-seq (small RNA, smRNA-seq; hence the name was miRNAselector), RNA-seq and qPCR, but can be applied for every problem where numeric features should be selected to counteract overfitting of the models. Using our tool, you can choose features, like miRNAs, with the most significant diagnostic potential (based on the results of miRNA-seq, for validation in qPCR experiments). -
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hrbrthemes
Opinionated, typographic-centric ggplot2 themes and theme components
hrbrthemes is a focused ggplot2 theme package with an emphasis on typography, layout precision, and visual polish. It includes themes like theme_ipsum and Font scales tailored for clean, high‑quality production graphics. -
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Open Intro Statistics
An open-source textbook written at the college level
OpenIntro Statistics is a dynamic take on the traditional curriculum, being successfully used at Community Colleges to the Ivy League. Each chapter's content is in one of the eight chapter folders that start with "ch_". Within each folder, there is a "figures" folder and a "TeX" folder. The TeX folder contains the text files that are used to typeset the chapters in the textbook. In many cases, R code is supplied with figures to regenerate the figure. It will often be necessary to install the... -
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RStan
RStan, the R interface to Stan
RStan is the R interface to Stan, a C++ library for statistical modeling and high-performance statistical computation. It lets users specify models in the Stan modeling language (for Bayesian inference), compile them, and perform inference from R. Key inference approaches include full Bayesian inference via Hamiltonian Monte Carlo (specifically the No-U-Turn Sampler, NUTS), approximate Bayesian inference via variational methods, and optimization (penalized likelihood). -
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circlize
Circular visualization in R
...It implements many types of plots using circular layouts: chord diagrams, circular heatmaps, arcs/links between sectors, genomic data visualization, etc. It provides low-level drawing functions as well as high-level functions to build complex visualizations. It’s often used in genomics, network analysis, or other fields where relationships among categories or entities can be nicely displayed in a circular fashion. Support for circular heatmaps, multiple tracks (rings), for showing multiple layers of data per sector. Good performance and stable codebase, detailed documentation including a book on usage examples.
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