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WebIssues is an open source, multi-platform system for issue tracking and team collaboration. It can be used to store, share and track issues with various attributes, description, comments and file attachments. The system is easy to install and use but has many capabilities and is highly customizable.
Website: https://webissues.mimec.org/
The current development version of WebIssues can be found at https://github.com/mimecorg/webissues
Little Software Stats is the first free and open source program that allows software developers to keep track of how their software is being used. It is coded in PHP/MySQL which allows it to run on most web servers.
SLOCCount is an easy-to-use tool that counts Source Lines of Code (SLOC). It auto-determines the language(s) (inc. C, C++, Ada, Assembly, shell, COBOL, C#, Fortran, Haskell, Java, LISP/Scheme, Perl, PHP, Python, Ruby, SQL). It also estimates cost & time.
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This JOYTASK project was created by using PHP and MySQL (might support more databases in future), it can be used to manage the progress of all your projects, tasks, etc. multi-users can works together to handle them.
OpenALM is an open-source application lifecycle management system. It is intended to be a framework to implement software development team's process. It also intends to provide an API to plug-in with version control system.