Search Results for "stochastic"
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Showing 26 open source projects for "stochastic"
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CellTypist
A tool for semi-automatic cell type classification, harmonization
...Harmonization, match and harmonize cell types defined by independent datasets. integration, integrate cell and cell types with supervision from harmonization. CellTypist recapitulates cell type structure and biology of independent datasets. Regularised linear models with Stochastic Gradient Descent provide a fast and accurate prediction. Scalable and flexible. Python-based implementation is easy to integrate into existing pipelines. A community-driven encyclopedia for cell types. -
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Uncertainty Baselines
High-quality implementations of standard and SOTA methods
...The library spans canonical modalities and tasks, from image classification and NLP to tabular problems, with baselines that cover both deterministic and probabilistic approaches. Techniques include deep ensembles, Monte Carlo dropout, temperature scaling, stochastic variational inference, heteroscedastic heads, and out-of-distribution detection workflows. Each baseline emphasizes reproducibility: fixed seeds, standard splits, and strong metrics such as calibration error, AUROC for OOD, and accuracy under shift. -
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Diffrax
Numerical differential equation solvers in JAX
Diffrax is a numerical differential equation solving library built for the JAX ecosystem, with a strong focus on composability, differentiability, and high-performance scientific computing. The project provides tools for solving ordinary differential equations, stochastic differential equations, controlled differential equations, and related systems in a way that fits naturally into modern machine learning and differentiable programming workflows. Because it is written to work closely with JAX, it supports just-in-time compilation, automatic differentiation, vectorization, and accelerator-backed execution on hardware such as GPUs and TPUs. ... -
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DeepXDE
A library for scientific machine learning & physics-informed learning
...Solving forward/inverse integro-differential equations (IDEs) [SIAM Rev.] fPINN: solving forward/inverse fractional PDEs (fPDEs) [SIAM J. Sci. Comput.] NN-arbitrary polynomial chaos (NN-aPC): solving forward/inverse stochastic PDEs (sPDEs) [J. Comput. Phys.] PINN with hard constraints (hPINN): solving inverse design/topology optimization [SIAM J. Sci. Comput.] Residual-based adaptive sampling [SIAM Rev., arXiv] Gradient-enhanced PINN (gPINN) [Comput. Methods Appl. Mech. Eng.] PINN with multi-scale Fourier features [Comput. Methods Appl. Mech. Eng.] -
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5
Darts
A python library for easy manipulation and forecasting of time series
darts is a Python library for easy manipulation and forecasting of time series. It contains a variety of models, from classics such as ARIMA to deep neural networks. The models can all be used in the same way, using fit() and predict() functions, similar to scikit-learn. The library also makes it easy to backtest models, combine the predictions of several models, and take external data into account. Darts supports both univariate and multivariate time series and models. The ML-based models... -
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crypto scanner v6.0.0
AI‑powered signals, risk analysis, and automated trading bot
...Live Data: Prices, volume, market cap (CoinMarketCap/CoinGecko), BTC dominance, market sentiment. Smart Signals: Basic (price/volume) & Advanced (RSI, MACD, Bollinger, Stochastic, ADX) with confirmation gate. Risk Rating: Low/Medium/High based on liquidity, volatility, category, technicals. Filters: Category (DeFi, AI, Gaming, NFT, Meme, L2), signal, risk, search. Indicators: RSI, MACD, BB%, Stochastic, ADX, ATR%, EMA, turnover, on‑chain data. Extras: TradingView charts, notes, Excel export.... -
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LINE Solver
Simulation and algorithms for queueing theory
LINE is an open-source software package to analyze queueing models via analytical methods and simulation. The solver is available for Python, MATLAB, C++ and Java. LINE features algorithms for the solution of open queueing systems (e.g., M/M/1, M/M/k, M/G/1, ...), open and closed queueing networks, and layered queueing networks. The LINE discrete event simulator (LDES) covers a broad spectrum of these models. Additional details are available on the project website: http://line-solver.sf.net. -
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LabRPS
Random phenomena generator
...Code and release files are primarily hosted on https://github.com/LabRPS/LabRPS and mirrored here LabRPS aims to be a tool for the numerical simulation of random phenomena such as stochastic wind velocity, seismic ground motion, sea surface ... etc. It can be in a wide range of uses around engineering, such as random vibration or vibration fatigue in mechanical engineering, buffeting analysis in bridge engineering.... LabRPS is mainly to assist reseachers in related fields to quickly implement new simulation methods programmatically in their new research work based on the existing works, help engineers to numerically generate random phenomena in a more realistic way, helps students and new comers to this field to learn quickly. ... -
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Neural Networks and Deep Learning
Code samples for my book "Neural Networks and Deep Learning"
...It helps students, researchers, and developers understand how neural networks function through practical implementations. The project demonstrates fundamental concepts such as feedforward networks, stochastic gradient descent, backpropagation, and neural network training. Its examples include recognizing handwritten digits using the MNIST dataset. The repository also explores more advanced neural network architectures through implementations using NumPy and Theano. The code encourages experimentation with network parameters, optimization techniques, and learning algorithms. ... -
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vits_chinese
Best practice TTS based on BERT and VITS
vits_chinese is an implementation of the VITS end-to-end text-to-speech (TTS) architecture tailored for Chinese (and possibly multilingual) speech synthesis. VITS is a model combining variational autoencoders (VAEs), normalizing flows, adversarial learning, and a stochastic duration predictor — a design that enables generation of natural, expressive speech, capturing variations in rhythm and prosody. By customizing or porting VITS for Chinese, this project aims to produce high-quality TTS outputs in a language that can be challenging due to tones, pronunciation variability, and prosody. The repository offers full training and inference pipelines: preprocessing, mel-spectrogram generation, training scripts, and audio synthesis. ... -
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PyTorch Implementation of SDE Solvers
Differentiable SDE solvers with GPU support and efficient sensitivity
This library provides stochastic differential equation (SDE) solvers with GPU support and efficient backpropagation. examples/demo.ipynb gives a short guide on how to solve SDEs, including subtle points such as fixing the randomness in the solver and the choice of noise types. examples/latent_sde.py learns a latent stochastic differential equation, as in Section 5 of [1]. -
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imgaug
Image augmentation for machine learning experiments
...It supports a wide range of augmentation techniques, allows to easily combine these and to execute them in random order or on multiple CPU cores, has a simple yet powerful stochastic interface and can not only augment images but also key points/landmarks, bounding boxes, heatmaps and segmentation maps. Affine transformations, perspective transformations, contrast changes, gaussian noise, dropout of regions, hue/saturation changes, cropping/padding, blurring, etc. Rotate image and segmentation map on it by the same value sampled. ... -
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TF Quant Finance
High-performance TensorFlow library for quantitative finance
TF Quant Finance is a high-performance library of quantitative finance components built on TensorFlow, aimed at research and production workloads. It implements pricing engines, risk measures, stochastic models, optimizers, and random number generators that are differentiable and vectorized for accelerators. Users can value options and fixed-income instruments, simulate paths, fit curves, and calibrate models while leveraging TensorFlow’s jit compilation and automatic differentiation. The codebase is organized as modular math and finance primitives so you can combine building blocks or target end-to-end examples. ... -
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ABC-SysBio implements likelihood free parameter inference and model selection in dynamical systems. It is designed to work with both stochastic and deterministic models written in Systems Biology Markup Language (SBML).
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Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes. Please check our new repository: https://github.com/CNS-OIST/STEPS
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Cambridge Rocketry Simulator
Simulate high power rocket flights with splash down plots
...Running in Monte Carlo mode allows generates multiple possible flight paths and splash down plots, indicating the probability of landing in an area. Peer-reviewed publication in the Journal of Open Research Software (JORS) http://doi.org/10.5334/jors.137 "Cambridge Rocketry Simulator – A Stochastic Six-Degrees-of-Freedom Rocket Flight Simulator" -
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StochPy - Stochastistic modeling in Python - is an easy-to-use package, which provides several stochastic simulation algorithms and unique analysis techniques, which can be used for stochastic simulations of biochemical systems.
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Stochastic Rule Builder (SRB)
Modeling framework for capturing positional and temporal dynamics
...All the possible actions are based on the current state of factors bound to the DNA. We developed a rule builder to automatically generate the complete set of biochemical interaction rules for any given DNA sequence. Off-the-shelf stochastic simulation engines can model the behavior of a system of rules and the resulting changes in the configuration of bound factors can be visualized. -
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Virus QSP Modeling
C++ and Python code for simulating RNA virus replication
Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files. -
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RNNLIB is a recurrent neural network library for sequence learning problems. Applicable to most types of spatiotemporal data, it has proven particularly effective for speech and handwriting recognition. full installation and usage instructions given at http://sourceforge.net/p/rnnl/wiki/Home/
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SecQua
SecQua tries to quantify the security of a given Information System
...Pirounias, The role of weighted entropy in security quantification, International Conference On Information Security And Artificial Intelligence (ISAI 2010), December 17-19, 2010, Chengdu, China. *C. Patsakis, D. Mermigas, S. Pirounias, N. Alexandris, E. Fountas, Towards a formalistic measuring of security using stochastic calculus, 3rd IEEE International Conference on Computer Science and Information Technology (ICCSIT 2010), Chengu, China, 9-11 July 2010. -
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NetBuilder' is a tool for building, visualizing, and simulating multi-layered biological networks, structured as hierarchical Petri-nets. It has a built-in stochastic simulator, but also provides easy access to other simulation and analysis.
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STOCHSIM is a stochastic simulator for biochemical reactions. The particles are represented as individual software objects which react according to probabilities derived from concentrations and rate constants. Simple spatial structures can be built.
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Path Sim contains a collection of tools for analysing Biochemical pathways with respect to stochastic behavior and cell-to-cell variations.
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Hierarchical Stochastic Block Model
just a bunch of PhD projects
Development codes for hierarchical stochastic block models
