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Scalable and accurate targeted gene assembly for large-scale NGS data
SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms.
...The method is fully described in Deshpande, V., Fung, E. D., Pham, S., & Bafna, V. (2013). Cerulean: A hybrid assembly using high throughput short and long reads. arXiv preprint arXiv:1307.7933.
http://arxiv.org/abs/1307.7933
Java classfile assembler/disassembler and interactive low-level editor
Java Classfile assembler/disassembler and low-level interactive editor. Allows viewing and manipulation of Java class data both manually and via scripts. Load in a class file, make changes, and then save the result.