Search Results for "clinical lab software"
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Showing 30 open source projects for "clinical lab software"
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Advanced Solutions Lab
This repos contains notebooks for the Advanced Solutions Lab
This repository contains Jupyter notebooks meant to be run on Vertex AI. This is maintained by Google Cloud’s Advanced Solutions Lab (ASL) team. Vertex AI is the next-generation AI Platform on the Google Cloud Platform. The material covered in this repo will take a software engineer with no exposure to machine learning to an advanced level. -
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AutoKeras
AutoML library for deep learning
AutoKeras: An AutoML system based on Keras. It is developed by DATA Lab at Texas A&M University. The goal of AutoKeras is to make machine learning accessible to everyone. AutoKeras only support Python 3. If you followed previous steps to use virtualenv to install tensorflow, you can just activate the virtualenv. Currently, AutoKeras is only compatible with Python >= 3.7 and TensorFlow >= 2.8.0. AutoKeras supports several tasks with extremely simple interface. AutoKeras would search for the... -
3
Qiskit
Qiskit is an open-source SDK for working with quantum computers
Qiskit [kiss-kit] is an open-source SDK for working with quantum computers at the level of pulses, circuits, and application modules. When you are looking to start Qiskit, you have two options. You can start Qiskit locally, which is much more secure and private, or you get started with Jupyter Notebooks hosted in IBM Quantum Lab. Qiskit includes a comprehensive set of quantum gates and a variety of pre-built circuits so users at all levels can use Qiskit for research and application... -
4
LangExtract
A Python library for extracting structured information
LangExtract is a Python library developed by Google that leverages large language models (LLMs) to extract structured information from unstructured text—such as clinical notes, research papers, or literary works—based on user-defined instructions. It is designed to transform free-form text into reliable, schema-constrained data while maintaining traceability back to the source material. Each extracted entity is precisely grounded in its original context, allowing visual inspection and... -
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5
MONAI
AI Toolkit for Healthcare Imaging
The MONAI framework is the open-source foundation being created by Project MONAI. MONAI is a freely available, community-supported, PyTorch-based framework for deep learning in healthcare imaging. It provides domain-optimized foundational capabilities for developing healthcare imaging training workflows in a native PyTorch paradigm. Project MONAI also includes MONAI Label, an intelligent open source image labeling and learning tool that helps researchers and clinicians collaborate, create... -
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FISSURE
The RF and reverse engineering framework for everyone
...The platform supports workflows related to signal discovery, demodulation, packet inspection, fuzzing, and attack simulation, making it useful for both defensive research and controlled lab testing. Its architecture is oriented toward extensibility, so users can integrate additional hardware, signal-processing components, and protocol-specific modules depending on their needs. -
7
aws-devops-zero-to-hero
AWS zero to hero repo for devops engineers to learn AWS in 30 Days
aws-devops-zero-to-hero is a 30-day AWS learning roadmap aimed squarely at DevOps engineers who want both conceptual understanding and hands-on projects. The README is structured as a day-by-day syllabus, starting with “Day 1: Introduction to AWS” and moving through IAM, EC2, VPC networking, security, DNS (Route 53), storage (S3), and many other core services. Each day mixes explanation with at least one concrete project or lab, such as deploying applications on EC2, designing secure VPCs,... -
8
Pedalboard
A Python library for audio
...It supports the most popular audio file formats and a number of common audio effects out of the box and also allows the use of VST3® and Audio Unit formats for loading third-party software instruments and effects. pedalboard was built by Spotify’s Audio Intelligence Lab to enable using studio-quality audio effects from within Python and TensorFlow. Internally at Spotify, pedalboard is used for data augmentation to improve machine learning models and to help power features like Spotify’s AI DJ and AI Voice Translation. pedalboard also helps in the process of content creation, making it possible to add effects to audio without using a Digital Audio Workstation. -
9
SecurePose
Automated Face Blurring, Kinematics Extraction and Leg dystonia Dx
SecurePose, an open-source software, automates face blurring, human movement kinematics extraction and leg Dystonia diagnosis. The software provides clinical-grade face blurring with minimal manual effort. It was validated on videos recorded in clinical settings. The tool employs pose estimation to track and uniquely identify individuals, recognize patients, perform effective face blurring, and identify leg dystonia. -
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Kokua viewer
Kokua is a V3 based open source metaverse viewer project.
Kokua is an open source metaverse viewer project based on the Second Life Viewer source. Disclaimer: This software is not provided or supported by Linden Lab, the makers of Second Life. The goal of Kokua is to greatly improve the usability of the Viewer through community involvement, thoughtful design, modern development methods, and a pro-change atmosphere. -
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itom
itom - an Open Source Measurement, Automation and Evaluation Software
itom is an open source software suite for operating measurement systems, laboratory automation and data evaluation. One main application of itom is the development and operation of sensor and measurement system for instance in a laboratory environment. Therefore, the software has to be able to communicate with a wide range of different hardware systems, such as cameras or actuators and should provide a diversified and as complete as possible set of evaluation and data processing methods.... -
12
Astrape
Optical-packet node transceiver frequency allocation
In an optical network scenario which consists of multiple nodes (whiteboxes) at its edges and ROADMs in-between, the coherent transceiver average laser configuration time is improved. The process is evaluated according to a testbed setup. This is facilitated in the appropriate lab equipment (or via simulation when required). For that purpose, a software agent (Netconf server) residing at the whiteboxes, is developed receiving input from the Software-Defined Networking (SDN) packet controller (PacketCTL - a Netconf client). Then, configuration of the local transceiver laser frequencies of the controlled pluggable devices takes place, for facilitating the connectivity in-between the ROADM network. ... -
13
fastMRI
A large open dataset + tools to speed up MRI scans using ML
fastMRI is a large-scale collaborative research project by Facebook AI Research (FAIR) and NYU Langone Health that explores how deep learning can accelerate magnetic resonance imaging (MRI) acquisition without compromising image quality. By enabling reconstruction of high-fidelity MR images from significantly fewer measurements, fastMRI aims to make MRI scanning faster, cheaper, and more accessible in clinical settings. The repository provides an open-source PyTorch framework with data... -
14
DeepMind Research
Implementations and code to accompany DeepMind publications
This repository collects reference implementations and illustrative code accompanying a wide range of DeepMind publications, making it easier for the research community to reproduce results, inspect algorithms, and build on prior work. The top level organizes many paper-specific directories across domains such as deep reinforcement learning, self-supervised vision, generative modeling, scientific ML, and program synthesis—for example BYOL, Perceiver/Perceiver IO, Enformer for genomics,... -
15
Wooey
A Django app that creates automatic web UIs for Python scripts
Wooey is a simple web interface to run command line Python scripts. Think of it as an easy way to get your scripts up on the web for routine data analysis, file processing, or anything else. The project was inspired by how simply and powerfully sandman could expose users to a database and by how Gooey turns ArgumentParser-based command-line scripts into WxWidgets GUIs. Originally two separate projects (Django-based djangui by Chris Mitchell and Flask-based Wooey by Martin Fitzpatrick) it has... -
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PySchool
Installable / Portable Python Distribution for Everyone.
PySchool is a free and open-source Python distribution intended primarily for students who learn Python and data analysis, but it can also used by scientists, engineering, and data scientists. It includes more than 150 Python packages (full edition) including numpy, pandas, scipy, sympy, keras, scikit-learn, matplotlib, seaborn, beautifulsoup4... -
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ADFRsuite
Automated docking software tools from the Sanner lab at Scripps
the ADFRsuite provides a self contain python-based software environment with various tools for automated docking. visit ccsb.scripps.edu/adfr for more info -
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NLP Architect
A model library for exploring state-of-the-art deep learning
NLP Architect is an open-source Python library for exploring state-of-the-art deep learning topologies and techniques for optimizing Natural Language Processing and Natural Language Understanding neural networks. The library includes our past and ongoing NLP research and development efforts as part of Intel AI Lab. NLP Architect is designed to be flexible for adding new models, neural network components, data handling methods, and for easy training and running models. NLP Architect is a... -
19
nginx ui
Nginx UI allows you to access and modify the nginx configurations
We use nginx in our company lab environment. It often happens that my colleagues have developed an application that is now deployed in our Stage or Prod environment. To make this application accessible nginx has to be adapted. Most of the time my colleagues don't have permission to access the server and change the configuration files and since I don't feel like doing this for everyone anymore I thought a UI could help us all. If you feel the same way I wish you a lot of fun with the... -
20
cntnr
CLI wrapper for basic container (Docker/libpod) management tasks
CLI wrapper for basic container (Docker/libpod) management tasks. This is a Python wrapper script to simplify specific tasks in a container environment. It is designed to work with your container runtime of choice (currently podman and docker). A CLI menu makes these selections possible. This project was created for a lab assignment in NSSA-244 Virtualization at the Rochester Institute of Technology. -
21
xpd-ebike
Infineon e-bike controller setup tool
XPD (stands for "eXtended Parameter Designer") is an alternative to "KeyWin e-Bike Lab Parameter Designer" software used to program the so-called "Infineon" e-bike controllers. * It provides some additional features missing in the original program, and is generally easier to use. * It is opensource so you can learn how it works and add unique features to it or customize to suit your own needs. * It is cross-platform: works on Linux, Windows and Android. -
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Kokua
Kokua is a V3 based open source metaverse viewer project.
Kokua is an open source metaverse viewer project based on the Second Life Viewer source. Disclaimer: This software is not provided or supported by Linden Lab, the makers of Second Life. The goal of Kokua is to greatly improve the usability of the Viewer through community involvement, thoughtful design, modern development methods, and a pro-change atmosphere. -
23
cpR Chemical Pathology interface for R
A graphical user interface to R for use in Clinical Chemistry
This software is free and open-source. It is released under the GNU Public license and comes with absolutely no warranty. -
24
WebChemViewer
A simple program for sharing molecular structures with associated data
...WebChem Viewer is a simple, free, open-source program that generates HTML-formatted output that can be viewed in any modern web browser, on any operating system (including mobile), without requiring the installation of additional software. The output can also be easily incorporated into existing web pages. WebChem Viewer is released under the FreeBSD license. It was created by Jacob Durrant, a post-doc in the lab of Rommie E. Amaro. -
25
SiMTraM
"SiMTraM" Simulation of Mixed Traffic Mobility
"SiMTraM" Simulation of Mixed Traffic Mobility is an extension of SUMO (A Traffic Simulator Developed by DLR, Germany) for Heterogeneous traffic. This software is developed by Transportation Lab, IIT Bombay. SiMTraM supports the heterogeneous traffic behaviour often found at developing countries such as India, China and in most of the part of Asia and Middle East continent. SiMTraM also supports the homogeneous traffic found at other part of the world.
