Showing 3594 open source projects for "ekho-data"

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  • 1
    Collective Mind Technology

    Collective Mind Technology

    plugin-based framework for systematic and reproducible experimentation

    New version moved to http://github.com/ctuning/ck Collective Mind framework (cM) is an open-source plugin-based schema-free repository and infrastructure for collaborative, systematic and reproducible research and experimentation. This 3rd version (started in 2006) helps to implement, preserve, share and reproduce the whole experimental setup as connected modules and data. cM uses crowdsourcing to leverage knowledge and computational resources of multiple users. For example, it includes multi-objective GCC, LLVM and ICC auto-tuning scenarios using shared benchmarks, codelets, data sets, tools, and combined with classification and predictive models. cM includes OpenME interactive interface to open up and expose internals of various third-party tools such as GCC, LLVM, run-time systems, etc. and connect them to cM through dynamic plugins that allows online analysis and tuning of programs and architectures. ...
    Downloads: 0 This Week
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  • 2
    PanelCheck is an easy-to-use software tool for visualization of sensory profiling data using different types of plots. The joint information from the implemented plots provide detailed insight into assessor and panel performance.
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    Downloads: 28 This Week
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  • 3

    Analyzer for Files

    A tool to look into file contents

    Analyzer for Files (AoF) is a tool to look into file contents, analyze the structure with installed plug-ins, and show the results with several split windows including converted data and a tree if successful. It was designed as a workbench with a core and plug-in extensions. It can handle the normal plain-text file and data, complex binaries supported with the corresponding plug-ins. What's more, the developers can deploy and release their own plug-ins according to the plug-in developing standard. The development site is https://bitbucket.org/cadappl/anafile.
    Downloads: 0 This Week
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  • 4
    MicrobeGPS

    MicrobeGPS

    The Explorative Taxonomic Profiling Tool for Metagenomic Data

    MicrobeGPS is a bioinformatics tool for the analysis of metagenomic sequencing data. The goal is to profile the composition of metagenomic communities as accurately as possible and present the results to the user in a convenient manner. One main focus is reliability: the tool calculates quality metrics for the estimated candidates and allows the user to identify false candidates easily.
    Downloads: 1 This Week
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  • 5
    RPy (R from Python)
    RPy is a very simple, yet robust, Python interface to the R Programming Language. It can manage all kinds of R objects and can execute arbitrary R functions (including the graphic functions). RPy has been superseded by the RPy2 project: https://rpy2.github.io/
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    Downloads: 10 This Week
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  • 6
    Neural Libs

    Neural Libs

    Neural network library for developers

    ...The project also includes examples of the use of neural networks as function approximation and time series prediction. Includes a special program makes it easy to test neural network based on training data and the optimization of the network.
    Downloads: 0 This Week
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  • 7
    ADOMA
    ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW....
    Downloads: 1 This Week
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  • 8

    CSV F-Curve Importer for Blender

    This is a Python script to import a CSV file to Blender f-curves.

    This is a Python script for Blender 2.5x and it imports a CSV file into Blender and creates f-curves. This project has just started, please wait for a while. Please go to the page given below for the information of how to start to use this and its details.
    Downloads: 0 This Week
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  • 9
    snakeFlow - collector for flow protocol version 5 writetten on python 2.7 By default output data to the console. May store file data and the database MySQL docs (2 parts): http://snakeproject.ru/rubric/article.php?art=python_netflow_collector_1 http://snakeproject.ru/rubric/article.php?art=python_netflow_collector_2
    Downloads: 0 This Week
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  • 10

    SCaVis

    Scientific Computation and Visualization Environment

    SCaVis is an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with Java and a number of scripting languages: Jython (Python), Groovy, JRuby, BeanShell. SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. ...
    Downloads: 1 This Week
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  • 11
    *WARNING* gtburst moved to github (https://github.com/giacomov/gtburst). ########################################## gtBurst is a tool to download data, analyze and simulate Gamma-ray Bursts and Solar Flares as observed by the NASA Fermi satellite.
    Downloads: 2 This Week
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  • 12

    pipasic

    pipasic: Protein Abundance Correction in Metaproteomic Data

    Metaproteomic analysis allows studying the interplay of organisms or functional groups and has become increasingly popular also for diagnostic purposes. However, difficulties arise due to the high sequence similarity between related organisms. Further, the state of conservation of proteins between species can be correlated with their expression level which can lead to significant bias in results and interpretation. These challenges are similar but not identical to the challenges arising in...
    Downloads: 0 This Week
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  • 13
    ospfdiscoverysnmp

    ospfdiscoverysnmp

    OSPF network discovery script via SNMP.

    ...Prior to running the script, the user should configure SNMPv2 community string on the device and also include the subnet between his PC and the router into the OSPF process, so he has IP connectivity to all other OSPF nodes. After providing necessary info and the OSPF info is gathered, the user has three choices: display the OSPF routers info on the screen, export the data to a file for Excel importing and generate the OSPF topology showing neighborships, router IDs and neighbor IPs. Tools used for coding and testing: Python 2.7.3, PySNMP, GNS3, Linux. Tested on Cisco 2621, 2691, 3660.
    Downloads: 0 This Week
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  • 14
    Community Linux

    Community Linux

    USB Drive Writable Linux Distribution

    Community Linux is a USB drive based fully functional writable Linux Distribution. It boots and runs with a comparable speed as a hard drive installation. Community Linux allows one to create a low cost solid state development and production platform. For new ComLin drive creation, one needs to download the full install (comlin-016.tar.gz) ... (not just the scripts) Update: Community Linux will now run on most every machine. Update: Added Sound drivers, Intelligent...
    Downloads: 1 This Week
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  • 15
    PangView

    PangView

    Text Viewer that displays text similar to pango

    ...The parser reads pango tags similar to html. The utility was written, so formatted text can be displayed quickly. NEW! The parser now is updated to use a faster method of internal data structure.
    Downloads: 1 This Week
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  • 16
    xmipp

    xmipp

    Image processing suite for Electron Microscopy

    XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es
    Downloads: 0 This Week
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  • 17
    MicroView
    MicroView is a 2D/3D image viewer and analysis tool. It is written in Python and uses VTK for all of its graphical capabilities.
    Downloads: 7 This Week
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  • 18

    iMir

    Integrated pipeline for HT miRNA-Seq data analysis

    ...To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs.
    Downloads: 0 This Week
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  • 19
    PhyloTrack

    PhyloTrack

    PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples

    PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade-defining polymorphism. ...
    Downloads: 1 This Week
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  • 20

    Yang XML viewer

    PyGtk2-based application that shows Yang-models as Treeview

    The application uses 'pyang' for creating a XML file and displaying the Yang-model in a Treeview. Additionally it allows to send Netconf requests to a configured target. For this purpose, it uses the Netconf client from [1] or can use an external console too. [1] https://github.com/tail-f-systems/JNC/blob/master/examples/2-junos/netconf-console
    Downloads: 0 This Week
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  • 21
    Markup.py is an intuitive, light-weight and customizable HTML/XML generator in Python. Development moved to github in 2017 and the name changed to MarkupPy in order to be more pip friendly. See http://github.com/tylerbakke/MarkupPy for all further details (documentation, new releases, etc.). This sourceforge page is left as a historic relic and won't be updated.
    Downloads: 0 This Week
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  • 22
    Another plain text format with target in the easy edition of outlines.
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  • 23
    ILNumerics.Net
    math lib for .NET. n-dim arrays, complex numbers, linear algebra, FFT, sorting, cells- and logical arrays as well as 3D plotting classes help developing algorithms on every platform supporting .NET. Sources from SVN, binaries: http://ilnumerics.net
    Downloads: 0 This Week
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  • 24
    Python XML Validator

    Python XML Validator

    Validates XML against xml schema. Based on Python lxml module.

    Validates XML against xml schema. Based on Python lxml module.
    Downloads: 0 This Week
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  • 25
    The pyARS python module allows developers to use BMC's ARSystem (Remedy ARS) and Atrium CMDB functions from within Python. Using Python's interactive shell, it is extremely easy to retrieve and modify data entries as well as workflow objects. ARSystem, also known as ARS or Remedy, is a powerful enterprise workflow engine. Atrium is a Configuration Management Data Base, a.k.a. Installed Base built on top of ARSystem.
    Downloads: 3 This Week
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