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Volumetric file viewer for the human brain. Easy, powerful and flexible fMRI/MRI brain research and clinical neuro-surgery tool. Using state of the art open VTK 3D library, the proven Qt GUI toolkit, coded in Python.
ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.
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Our primary goal is to create a great, full featured, 3D CAD environment for Blender for use by engineers, designers, drafters, architects, etc. based on the OpenCascade toolkit.
KestrelHPC is a software developed to make life easier to the people that want to have a Diskless Cluster. This Cluster is Multi-User and it has got many tools to configure your cluster. This software can be installed in a Debian or Ubuntu.
A database and a web front end for physiologic data on animal feeding, developed with PostgreSQL and Django at NESCent (http://www.nescent.org) for Mammalian Feeding Working Group (http://www.feedexp.org).
Current development of the codebase is on Github at http://github.com/NESCent/feedingdb.
Java based multi-agent platform built on an organizational model (agent, group, role). MadKit provides general agent facilities (lifecycle management, message passing, distribution, ...), and allows high heterogeneity in agents.
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ptsa (pronounced pizza) stands for Python Time Series Analysis. A python module specifically designed with neural data in mind (EEG, MEG, fMRI, etc...), but applicable to almost any type of time series.
OpenPMU is a collaborative project developing a software defined Phasor Measurement Unit for Smart Grids and electrical utilities. This project is currently hosted by Queen’s University Belfast.
VISPA is a novel development environment for high energy physics analyses, based on a combination of graphical and textual steering. The main goal of VISPA is to support users in prototyping, performing, and verifying a data analysis of any complexity.
*nts* provides a simple format for using text files to store notes, a command line interface for viewing notes in a variety of convenient ways and a cross-platform, wx(python)-based GUI for creating and modifying notes as well as viewing them.
The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs.
This is a software tool that automates the process of benchmarking high performance computer clusters by auto analyzing the hardware of the cluster and configuring and compiling specialized benchmarks (HPC Challenge, IOzone, Netperf)
Hosting exploit/backdoor detection daemon.It's written in python , and uses inotify (pyinotify) to monitor file system activity.It checks files smaller then some size,compares their md5sum and hex signatures against DBs with known exploits/backdoor.
PocketAnalyzerPCA combines a geometric algorithm for detecting pockets in proteins with Principal Component Analysis and clustering. This enables visualization and analysis of pocket conformational distributions of large sets of protein structures.
pyastrolib is a python library providing professional astronomers a robust set of tools for astronomical data analysis. This project will provide all the functionality as NASA's IDL Astronomy User's Library in addition to other planned features.
Open Source Particle Image Velocimetry and PIV Analysis
OpenPIV is an initiative of scientists to develop a software, algorithms and methods for the state-of-the-art experimental tool of Particle Image Velocimetry (PIV) which are free, open source, and easy to operate.
booggie brings object-oriented graph grammars into engineering - Based on the application of object-oriented graph grammars, engineering knowledge is formalized and becomes computable in order to solve design tasks.
"""
E-Cell's source code repository has moved to GitHub!
https://github.com/ecell
The development of E-Cell now continues on GitHub.
The Subversion repository was abandoned.
"""
E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components driven by multiple algorithms with different timescales to coexist in a model.
DICOM Tag Slayer lets you view, modify, export and find differences in DICOM-format files. Program is multiplatform, written in Python+PyQT4+PyDICOM gives you both GUI and CLI for easier script integration.