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DSS student toolbox is an interface created over the Direct Sequential Simulation algorithm created by A. Soares, 2001. It allows you to launch this simulation method using simple tools from a GUI.
NOTE: this software development is deprecated. You can perform the same operations in our newest software GEOMS2 (beta release). You can download it here: https://sourceforge.net/projects/geoms2/
Based on the introduction of Genetic Algorithms in the excellent book "Collective Intelligence" I have put together some python classes to extend the original concepts.
A genetic algorithm in Python for evolving programs that write a given string to an allocated dataspace, using a made-up machine language with only 7 instructions and flow reversal.
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This project is a complete cross-platform (Windows, Linux) framework for Evolutionary Computation in pure python. See the project site at http://pyevolve.sourceforge.net or the blog at http://pyevolve.sourceforge.net/wordpress
PocketAnalyzerPCA combines a geometric algorithm for detecting pockets in proteins with Principal Component Analysis and clustering. This enables visualization and analysis of pocket conformational distributions of large sets of protein structures.
This is a fast C implementation of Arturo Camacho's SWIPE' pitch extraction algorithm. See the project homepage for more about the advantages of the SWIPE' algorithm. swipe-1.0.tar.gz contains the current source, which should compile quite neatly.
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Text2Genome is a set of scripts to extract nucleotide sequences from scientific articles and to map them to genomes and genes using a local alignment algorithm (BLAST/BLAT)
DWIP is short for Disk Wiping and Imaging Tool. This tool is being built for Mississippi State Universities National Forensics Training Center for use on a live cd to give out to it's students.
A character recognition software using a Back Propagation Algorithm for a 2-layered Feed Forward Non-Linear Neural Network. Written in Python, Graphics done using Pygame.
This is a simple spaced repetition flash card program. It is intended for daily use. You create the cards and learn them at your own pace. The program schedules them for review using a spaced repetition algorithm.
This project implements an algorithm for segmenting protein sequences into smaller meaningful blocks. The method is based on the pure statistical approach and it uses an analogy between proteins and natural language.
PGAF provides a framework tuned, user-specific genetic algorithms by handling I/O, UI, and parallelism. It is designed for optimizing functions that take a "very long time" to evaluate.
Springbots is a python application which takes a set of 2d physical structures built with nodes and movable springs and evolve them for specific tasks like walking, swimming and jumping using genetic algorithm.
A threaded Web graph (Power law random graph) generator written in Python. It can generate a synthetic Web graph of about one million nodes in a few minutes on a desktop machine. It implements a threaded variant of the RMAT algorithm.
This is an algorithm to codify Spanish words to an equivalent phonetic code. That intends to be a substitute of Soundex algorithm that is not practical to use in Spanish. It is very useful for search engines based on text information.
Processes boolean functions which can be provided either as a list of 0s and 1s or which can be provided as a formula in first-order logic (using disjunctive or conjunctive normal forms). Internally the Quine McCluskey algorithm is used.