Showing 2867 open source projects for "research"

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  • 1

    QUASR

    Cross-platform NGS processing and analysis pipeline in Python

    QUASR is a lightweight pipeline written to process and analyse next-generation sequencing (NGS) data from Illumina, 454, and Ion Torrent platforms. Although originally written for viral data, it is generic enough to work on any NGS dataset. Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is...
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  • 2
    Pronac MediaMonkey Extension

    Pronac MediaMonkey Extension

    Recommends music based upon your current taste.

    A music recommendation engine. It is meant to be an add-on for popular media players like Winamp, Amarok, Rhythmbox or Banshee. Currently supports only MediaMonkey Player. Downlaod, extract and run "pronac.exe". Play the first song from the Now Playing list, it'll recommend you next songs from the same list. NOTE: MAKE SURE THAT SONG SHUFFLE IS TURNED OFF WHILE USING PRONAC. Based upon K-Nearest Neighbor Machine Learning Algorithm, K-Fold Cross Validation and EchoNest for audio features.
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  • 3
    PROJECT MOVED: see http://www.vmtk.org for up-to-date information. Libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis in image-based blood vessel modeling.
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  • 4
    jLab (ex SciCalc)
    jLab est une plate-forme scientifique destinée à être l'outil de travail privilégié des étudiants, enseignants, ingénieurs, scientifiques et chercheurs. jLab est totalement modulaire et facilement extensible via un système de modules
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    Demo Series - Small Business Backup By Veeam

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  • 5

    FBA-Machine

    Time on Task observation tool for educators and psychologists

    FBA-Machine is a time on task observation tool designed for special educators and school psychologists. It allows for accurate timing of individual on-task and off-task events rather than sampling intervals like a paper observation. Useful for planning behavior support plans and for evaluating the effectiveness of pharmaceutical interventions.
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  • 6

    Otto's Workshop

    Geomatics & mapping tools for the masses!

    The purpose of this workshop is to share the tools created as an aid to our everyday work with students, enthusiasts and specialists interested in the development and use of new technologies including (but not limited to) geomatics, mapping, web mapping services (WMS), drafting, remote sensing, GIS and related occult sciences of Gaia. Check out the NBR (dn2nbr) and NDVI (dn2ndvi) calculating tools for GRASS GIS at the top menu!!!
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  • 7
    This project provides a set of Python tools for creating various kinds of neural networks, which can also be powered by genetic algorithms using grammatical evolution. MLP, backpropagation, recurrent, sparse, and skip-layer networks are supported.
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  • 8
    evofetch

    evofetch

    Mining tool for software repositories

    EvoFETCH is a tool to extract information about software entities such as classes, methods, and attributes from software repositories. EvoFETCH is middleware and makes use of other freely available software to perform the extraction and provide query functionality.
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  • 9
    PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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    Downloads: 4 This Week
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  • 10

    Quick Quote

    Keep all of your quotes in one place and easily find them later.

    Quick Quote allows you to store quotes and easily find them by searching for things like names, dates, events or anything else you tag when entering your quote. Great for history students, or people who often use quotes from people, such as historical, political figures, or actors, inventors, anyone who has said something worth remembering, and would like easy access to them.
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  • 11

    Atlas2Cloud

    Atlas2 Genome Analysis Pipeline on Amazon Web Services

    This is the backend source code of the Atlas2-Cloud pipeline on Amazon which starts and terminates worker nodes, runs analysis and monitors worker instances. It is PRIMARILY meant to be used through Amazon Web Services (AWS) management console by looking for the public Atlas2-Cloud machine image. Alternatively, the code can also be used for running the pipeline from your computer. By installing this software on your computer you will be setting up your computer to act as the head node...
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  • 12
    Lightning Planning Framework for ROS

    Lightning Planning Framework for ROS

    ROS package implementing the Lightning Framework using OMPL

    LightningROS is a ROS package implementing the Lightning Path Planning Framework. The code here was developed for ROS Feurte. For later ROS versions, see https://github.com/WPI-ARC/lightning_ros This approach uses a path library to store previous experience while allowing generality by also planning from scratch. Please see the paper below for more details: A Robot Path Planning Framework that Learns from Experience Dmitry Berenson, Pieter Abbeel, and Ken Goldberg IEEE...
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  • 13
    Injection Wizard is an application for injecting traffic into WEP protected Wi-Fi networks, like aireplay-ng, but it's much more easy to use and it can work with worse conditions.
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  • 14
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  • 15

    niftilib

    ** MAIN SITE IS NOW: https://github.com/NIFTI-Imaging/nifti_clib **

    niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/
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    Downloads: 31 This Week
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  • 16
    QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation.
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  • 17
    DISTributed Adaptable Executable (DISTae) is a software layer that allows the portability of programs among different heterogeneous computing units and run the different parts of the code simultaneously in a distributed and heterogeneous environment.
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  • 18
    pycsw
    pycsw is an OGC CSW server implementation written in Python.
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  • 19

    pygolem

    Python API for the GOLEM Tokamak discharge database

    This simple Python API aims to provide a simple and easy to understand access to the discharge database of the GOLEM Tokamak. The scipy, numpy and matplotlib Python libraries are used for data analysis and plotting.
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  • 20

    CancerVaccine

    In silico vaccination experiment to determine best vaccination schedul

    This project is a simplified representation of the main immune system cells and their interactions. The aim is to simulate the effect of the introduction of a cancer vaccine cell which would stimulate the immune response against the tumor-associated antigen, and consequently against cancer cells themselves. In vivo vaccination experiments take very long to complete, so it would be useful to simulate these experiments such that the best schedule of vaccination is determined that would result...
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  • 21
    PROJECT HAS MOVED: https://github.com/wiki2beamer
    Downloads: 0 This Week
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  • 22

    Auto File Selection

    Detect all the "important" files from your computer.

    The main aim of this project is to design and develop a mechanism that can find all the “important” files inside a computer.
    Downloads: 0 This Week
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  • 23
    NLOPredict
    NLOPredict is a nonlinear optical prediction and data analysis tool. Nonlinear optical measurements can yield information about the structure of crystals, and orientation of molecules at surfaces and interfaces.
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  • 24

    ProtDB

    A protein database management framework

    This repository is outdated, the project has been renamed to SysBioTK and can be found at: https://sysbiotk.sourceforge.io/ ProtDB is a framework which aims to aid in the management of information on proteins from several databases, storing the information in a library. Several search functions are also included in order to filter the proteins in the library. Support for different screenings, such as control groups, is also included.
    Downloads: 0 This Week
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  • 25

    cancer_dynamics

    Cancer Dynamics web

    Website that shows the dynamics of a tumor by solving a system of ordinary differential equations. The results are two kind of graph images, and a gif file, being all of them available for download as a compressed file.
    Downloads: 0 This Week
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