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Rhea Genetic Engine is a highly versatile software engine used to solve ill-defined, abstract problems by employing a genetic pattern. It is easy to understand and use, yet provides advanced features for those who desire them.
Phylogenetic Representativeness is a method for estimating adequacy of taxon sampling for phylogenetic studies. Through a series of statistics generated by PhyRe, it is possible to evaluate taxon coverage within a given group.
Blaze is an application launcher that distinguishes from amongst the others by being able to automate recurrent tasks performed in the file-system or even any application on Microsoft Windows.
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--UPDATE-- New Version is now integrated in the official PyMOL plugin repository! --UPDATE--
The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands.
Educative desktop application that it's main goal is develop any kind of mathematical operation in an easy and quick way. It's focus to users that don't have programming knowledge.
This project is aimed at providing useful thermodynamic tools for biochemists, including formation energy estimation of virtually every biochemical compound and metabolic pathway analysis and profiling.
MAXIMUS is a genome assembly pipeline which takes the best out of multiple reference assemblies and de novo assembly. The benefits of this approach include better assembled repetitive regions, less gaps and higher accuracy for the resultant assembly.
PyQwt = FAST and EASY data plotting for Numerical Python and PyQt.
PyQwt is a Python wrapper for the Qwt C++ class library which extends the Qt framework
with widgets to display and control data for scientific and engineering applications.
Please note: We moved RCS, future releases, BUGS to https://github.com/PyQwt
In Systems Biology models are created in various formats (Matlab, Java, C/C++, Python, ...). "Annotate Your Model" will help you to link your model to biological web resources by creating a CSV file containing MIRIAM annotations.
Pinkl is a library written to build flexible applications to control instruments connected to a computer using a GPIB or COM interface and take, store and plot measurements with these instruments.
This toolkit allows complete control of a microscopy setup from Labview, Matlab, Scilab, Python, .Net, VB, IgorPro, Mathematica and more. Included is a standalone program for image acquisition and scripting control of a scientific microscope.
qips is a software package for analyzing ChIP-seq ("Chromatin ImmunoPrecipitation on sequencing") data. It finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.
The OpenFire processor is a Xilinx MicroBlaze-compatible processor being modified for use in Cyber Physical Systems research. This material is based upon work supported by the National Science Foundation under Grant No. CPS-0932113.
ReliaFree is a Python and PyGTK based suite of tools to assist in Reliability, Availability, Maintainability, and Safety (RAMS) analyses. ReliaFree is intended to be an Open Source alternative to proprietary RAMS analyses solutions.
This is a unix distribution I made so that I can develop from anywhere--a virtual desk if you will. Some of my friends and colleagues have found it useful, and an easily accessible place to put the operating system up is on the internet.
Yann is Yet Another Neural Network. Yann is a library to create fast neural networks. It is also a GUI to easily create, edit, train, execute and investigate networks. Multiple topologies, runtime properties and ensemble learning are supported.
This project is for particle accelerator start-to-end simulation. The project contains software infrastructure for setting up model run as service/client mode.
Model Builder is a graphical tool for designing, simulating and analyzing Mathematical models consisting of a system of ordinary differential equations(ODEs).
Shift Word Helper is a scrabble-like games helper, which includes an online dictionary client. Shift Word Helper est un bon assistant pour les jeux de mots tels que le scrabble, avec un dictionnaire en-ligne integré. English & french supported
pyComPic is a GUI (Graphical User Interface) for picprog, sdcc and gpasm written in Python. It uses pyGTK and GTK2 for the interface. It's a good choice if you want to avoid the command line. It works with all PIC programmers supported by picprog