Search Results for "research" - Page 67
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Showing 2867 open source projects for "research"
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HdfUtil is a collection of utilities to ease the exchange of HDF5 files between C++, Matlab and Python. The long term goal is integration into the main HDF5 distribution.
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PyRoboSim2D
Python+Pygame robot simulator 2D
2D robotic simulator in Python 2.x, tested in 2.6 and 2.7, under Win7(64) and Ubuntu 10.04 (Lucid). Needs the matching version of Pygame installed! (www.pygame.org) Download the .py file and two .bmp files: -->back2_800_600 for background -->any of the robo1.bmp through robo4.bmp for robot image (different colors). The map of the "room" can be changed by modifying the list of obstacles. Read more in ReadMe.txt and in the .py file comments. -
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MyNook
A machine learning system for supervised document classification
An open source system for supervised document classification based on statistical machine learning techniques. On the contrary of the state of art classification techniques, MyNook just requires the title of the document, not the content itself. -
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ReferenceFree
Scripts for reference free genomic analysis
These are Python scripts plus C/C++ programs for automating the reference free genomic analysis described in: Kua C-S, Ruan J, Harting J, Ye C-X, Helmus MR, et al. (2012) Reference-Free Comparative Genomics of 174 Chloroplasts. PLoS One 7(11). http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0048995 Analytical concept conceived by CHCannon and CSKua. Original script written in Mathematica by CHCannon. -
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GIPC
Geographical IP Correlation
TL;DR Version: I wrote a tool called GIPC (short for Geographical IP Correlation and pronounced Gypsy) which takes a list of IP address and returns the Geographical information you select based on the MaxMind.com GeoCity Database. The exe requires 2 inputs: The IP file (one IP per line) MaxMind GeoCity database – This can be downloaded HERE:http://geolite.maxmind.com/download/geoip/database/GeoLiteCity.dat.gz Please read more on my blog:... -
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RNA-Seq-Simulator
Realistic simulation of RNA-Seq short reads
A suite of Python programs to produce simulated Illumina RNA-Seq reads with a high level of realism. The starting positions of the reads and the distributions of read errors and quality codes are all empirically derived from real RNA-Seq datasets. The suite includes Python scripts to prepare the empirical read creation probability and read error distribution tables, and to generate and postprocess the simulated reads. -
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The Python Unified Membrane Analysis Toolkit is a suite of python tools for analyzing molecular dynamics simulations of membranes.
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py-collectd-csv
A python module and scripts for fetching specific CollectD CSV data.
CollectD-CSV is a small project providing utilities for analyzing CollectD CSV data locally. CollectD_CSV module provides functions for fetching data with a specified time interval and regular expressions matching the end of the path without the datestamp. The fetched data can be saved into files or returned as a list. fetchCSV.py script can be used to fetch the data matching the given parameters and save to files in a specified directory. monitorCSV.py script calculates the minimum,... -
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eemod_dnsmod
A detailed nitrogen model inside of a simple ecological model
This is an simple ecological model for lakes and reservoirs that contains a very detailed description of the most relevant nitrogen processes. The model is not very complete, but the main intention is to develop a library to be coupled with other models and use the full-mixed model as a testing version. A lot of things can be improved. I will read all the suggestions but I cannot promise that I will include all of them. Every new part of the code will contain the name of the author. If... -
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The sigrok project aims at creating a portable, cross-platform, Free/Libre/Open-Source signal analysis software suite that supports various device types, such as logic analyzers, MSOs, oscilloscopes, multimeters, LCR meters, sound level meters, thermometers, anemometers, light meters, dataloggers, function generators, power supplies, GPIB interfaces, and more.
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is a interactive molecular visualisation program designed especially designed for coarse-grained simulation of non-spherical particles. Ellipsoids (Gay-Berne), disks, and custom shaped uniaxial particle (e.g. pear-shaped particles) can be represented.
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pyirrlicht
Access to Irrlicht Engine SDK from assembler, C, Python, Basic, Pascal
Python ctypes module for the Irrlicht Engine SDK for 2d/3d games and graphics. Compatibility with all Python versions, wich support ctypes module. Second internal project is SWIG wrapper. Additional support for SVG files over AGG or Cairo library. Also irrlicht_c library give access to Irrlicht functional from other programming languages: ASM (FASM), C (TinyC), Basic (FreeBASIC, thinBasic, OxygenBasic), Pascal, Gentee, AutoIt and game frameworks like GameMaker or Blitz. -
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ReadWrapper is a Python toolset to prepare and package raw sequencing data ("reads") for submission to the Sequence Read Archive (SRA, http://trace.ncbi.nlm.nih.gov/Traces/sra/).
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SiMTraM
"SiMTraM" Simulation of Mixed Traffic Mobility
"SiMTraM" Simulation of Mixed Traffic Mobility is an extension of SUMO (A Traffic Simulator Developed by DLR, Germany) for Heterogeneous traffic. This software is developed by Transportation Lab, IIT Bombay. SiMTraM supports the heterogeneous traffic behaviour often found at developing countries such as India, China and in most of the part of Asia and Middle East continent. SiMTraM also supports the homogeneous traffic found at other part of the world. -
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The sandbox libraries (libsandbox & pysandbox) are an open-source suite of software components for C/C++ and Python developers to create automated profiling tools and watchdog programs. The API's are designed for executing and instrumenting simple (single process) tasks, featuring policy-based behavioral auditing, resource quota, and statistics collecting. The sandbox libraries were originally designed and utilized as the core security module of a full-fledged online judge system for...
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Black Spot Leaf Area Calculator
Automated leaf area estimation from scanned leaf images
Black Spot is a free stand alone software and method to estimate leaf area from images of leaves captured using standard flatbed scanners. This easy to use software allows the user to batch process a large number of samples from multiple species with minimal user input. -
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Neural Diversity Machines
A Hybrid Neural Network that implements a diverse transfer functions
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w3af, is a Web Application Attack and Audit Framework. The w3af core and it's plugins are fully written in python. The project has more than 130 plugins, which check for SQL injection, cross site scripting (xss), local and remote file inclusion and much more. This project has been migrated to github! See details in our project site: http://w3af.org/
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AMBIENT
Find active modules in metabolic networks using high-throughput data
IMPORTANT: Since publication of the AMBIENT method in BMC Sys Bio, several updates have been made. If you wish to use the version used in the paper it is v0.6.3, however I recommend using the latest version which works in the same way but with additional options and has stability and performance improvements. Thanks for your interest! AMBIENT (Active Modules for Bipartite Networks) is a Python module that uses simulated annealing to find areas of a metabolic network (modules) that have... -
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feinerleiser
Feinerleiser implements cite rules from the humanities for jabref
Feinerleiser (speak finalizer) takes an odt file that has citations inserted by jabref and expands them according to rules set by the user in an xml file. Contrary to the style of citation used in engineering, psychology or medicine [Doe 1985; 123] the user can create complex citation-styles, that satisfy the needs and expectations of researchers from the field of humanities. Features Include Ibidem-Cite, full citation on first cite and others. It also supports sorting and selective... -
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Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no
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Dvipdfm tool for SCons
SCons tool to cooperate with dvipdfm program
SCons is a make replacement providing a range of enhanced features such as automated dependency generation and built in compilation cache support. SCons rule sets are Python scripts so as well as the features it provides itself SCons allows you to use the full power of Python to control compilation. This is a SCons extension (tool) which enables usage of the dvipdfm program to convert dvi files to pdf. -
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GS junior Webserver
GS junior Webserver
GS junior Webserver is a web based file server to easily access sequencing data of
