Search Results for "research" - Page 64
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Showing 2867 open source projects for "research"
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dna-barcode
Find and analyze barcodes in DNA sequence files
Find and analyze barcodes in DNA sequence files -
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Modbus Traffic Generator
Open Source SCADA Security Evaluation Tool
Modbus traffic generator is a tool written in Python, and uses Scapy libraries to evaluate the effectiveness of SCADA security solutions. The tool generates Modbus/TCP packets, where the characteristics of these packets are extracted from Snort NIDS Modbus rules. The generated packets trigger related alerts in Snort NIDS. It is useful to anybody interested in evaluating and testing their SCADA security solution or other people solutions. Requirements: * Python 2.x or higher * Scapy *... -
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A collection of bioinformatics-related software created by members of Cancer Research UK (possibly among others).
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PyGAO
Genetic Algorithm Optimization for Python
A simple interface for performing genetic algorithm optimization for numerical problems. I am starting with a stripped-down version, where a solution can be described using a single vector of float numbers. Eventually, I will expand to more generic data structures and add multiple-species search options. For the time being, I have no plans of developing a GUI. For now, this is strictly a computational module. In addition to the standard Python libraries, PyGAO uses numpy. -
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InproTK
An Incremental Spoken Dialogue Processing Toolkit
InproTK is an Incremental Spoken Dialogue Processing Toolkit, that is, a toolkit to help you build dialogue systems that listen and talk incrementally, allowing for advanced interactional behaviour. Please see our Wiki for more information: http://sourceforge.net/p/inprotk/wiki/ -
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Language Constructor
Complete tool for constructing/manipulating languages in digital form
With this tool you can easily design a new language, digitize an existing one or incrementally reconstruct an ancient language. It allows for free experimentation of all aspects of the language, so it does not have to be made consistent on paper first. You can edit script, syntax, grammar, morphology, lexicon and phonology, as well as write documents in the language, as it might be too complex to be handled by current font technology. The information is stored in xml format for easy... -
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Tag-find
a python script to recognize specific sequence of tags
Tag-find is a python script developed to clean up reads from a specific 12 nucleotides long tag sequence used during the cDNA library preparation for RNA-seq experiments. -
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Chi Square Calculator
An unlimited calculator for Chi Squared
This Chi Squared Calculator allows the user to enter any number of rows and columns, enter the observed frequencies used in the calculation, and the program will output the answer, as well as the degrees of freedom. This program runs on Python 3.2 ## BUT NO LONGER REQUIRES PYTHON to run! (Now in .exe form!) ## Sorry for the lack of floating point (Decimal) numbers support; attempting to input decimals will crash the program. Will fix soon! If you need any help, information, my email... -
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Autonomous Robot Simulator
Physically-accurate robotics simulator written in Python
ARS is a physically-accurate robotics simulator written in Python. It's main purpose is to help researchers with to develop mobile manipulators and, in general, any multi-body system. It is open-source, modular, easy to learn and use, and can be a valuable tool in the process of robot design, in the development of control and reasoning algorithms, as well as in teaching and educational activities. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Fast Artificial Neural Network Library is a free open source neural network library, which implements multilayer artificial neural networks in C with support for both fully connected and sparsely connected networks. Cross-platform execution in both fixed and floating point are supported. It includes a framework for easy handling of training data sets. It is easy to use, versatile, well documented, and fast. Bindings to more than 15 programming languages are available. An easy to read...
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t2t-pipe
automatic alignment pipeline for parallel treebanks
The *Tree-to-Tree (t2t) Alignment Pipe* is a collection of python scripts, co-ordinating the process of automatic alignment of parallel treebanks from plain text files with a single call from a unix command line. Supported Languages: DE, FR, EN -
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VisualRiSC
Toolbox visualizing computations of Realizable Sign Conditions.
This toolbox contains a set of Python procedures in order to compute examples associated with the computation of Realizable Sign Conditions (RiSC) due to the approach by Basu, Pollack and Roy. The RiSC approach is a way to solve and analyze systems of polynomial equations and inequalities over the real numbers in the field of real-algebraic geometry. The involved computations often consist of highly sophisticated notions, not easy to illustrate by hand. VisualRiSC provides implementations of... -
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openfablab
Open Source FabLab Project
Software script assembly to be executed on cnc machines and robots to build, maintain and replicate open source fablab. Here software meets hardware. -
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Genetic data converter
Convert genetic data for hapmixmap software
Genetic data converter, for hapmap.org and hapmixmap data formats. Reads data in tabular format and writes in hapmixmap format. It's possible to add extensions to output different data formats. -
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A 2.4 GHz wireless development board suitable for Bluetooth experimentation. Open source hardware and software. This project has moved to GitHub - https://github.com/greatscottgadgets/ubertooth
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PyDQP
Distributed QP Solver in Python
PyDQP implementes 11 different dual decomposition schemes, both first and second order, in order to solve quadratic programs in a distributed fashion. -
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A functional-structural model of tree growth based on carbon partitioning among individual organs that compete for resources.
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A Python package for creating xmgrace files. The PyGrace project has been moved to github. Come check us out at http://pygrace.github.com/.
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alignlib is a C++ library for computing and manipulating sequence alignments of protein sequences. Most of the functions and classes are exported to python thus permitting easy scripting of complex tasks. Alignlib has moved to github (https://github.com/AndreasHeger/alignlib)
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DogoIDS
Active-probing-based network IDS for wireless networks
DogoIDS is an open-source active-probing-based network intrusion detection system (AP-NIDS) for wireless multihop networks (MANETs, Wireless Mesh Networks, Sensor Networks, etc). At this stage, DogoIDS only support the IEEE 802.11s standard for Wireless Mesh Networks. DogoIDS is now under construction in a very early stage and mainly for research purposes. However, we aim to release a stable version ready for production soon. *** IMPORTANT *** We uploaded the very first experimental implementation of DogoIDS (still alpha), so expect to find bugs. The Documentation is sadly not yet fully done. So far, we did experiments using a IEEE 802.11s network (open80211s kernel 3.10.0-rc4-wl). ... -
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Easy Equations
Hand Written Equation Creator
Easy Equations is a utility using which one can write the mathematical equations. The focus of this utility is to provide user friendly access to write mathematical equations which is helpful for students, lecturers, mathematicians and Research persons who prefer using mathematical equations in a document, PowerPoint or web sites. Works on Windows as well as Linux platforms. Software Requirements: JDK 7 or higher. Linux Platform with kernel version 2.7 or higher.(for Linux users).python necessary only in linux environment to use COPY functionality.python is pre installed in recent linux distributions. -
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Academic Web Watch
Controls a selection of web robots for monitoring web sites.
AWW controls a selection of web robots, that collect information about how web sites change over time. It stores this information, and can export it in various ways. The included robots are few and simple, but it is easy to include more, depending on what information should be collected. AWW is mainly a control centre, that executes tasks, and stores the results. Initially the goal is not to provide a lot of functionality, but rather to make something that is easily extendible. The... -
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EASER
Ensembl Easy Sequence Retriever
Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: https://doi.org/10.4137/EBO.S11335. -
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SunlightDPD
Open source codes related to dissipative particle dynamics
SunlightDPD provides a home for open source codes related to the dissipative particle dynamics (DPD) simulation method. Currently the file release contains the HNC integral equation code.
