Search Results for "research" - Page 61
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Showing 2809 open source projects for "research"
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AbMining ToolBox
python scripts to analyze antibody libraries
02-14-2014. Hamming distance calculation has been updated. These are python scripts to analyze antibody libraries sequenced by next generation sequencing methods (454, Ion Torrent, MiSeq) as described in D'Angelo et al MAbs. 2014 Jan 1;6(1):160-72. -
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nec2pylib
Do with NEC2 antenna modeling into Python
With this lib you can easily create NEC2 file and automatically run NEC2 simulation with python. Geometry is defined with using 3D vectors. You can cut, rotate, copy, add vectors. Parsing NEC2 output result file is yet possible but in beta stage. The final goal is to call and score nec2 simulation with optimisation algorithms.. Source code is full documented. -
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DiagSim
Diagnostics simulation for particle accelerators
DiagSim is a collection of Python modules for simulating beam diagnostics in particle accelerators, at the moment only cavity BPMs, with other types of BPMs and other diagnostics to follow. Or so we think. Anyway, we use beam data exported from beam trackers, trace the signals through the diagnostics and processing, so that they can be processed as real data, and the input and measured beam parameters can be compared. -
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Hierarchical cluster engine HCE
Hierarchical Cluster Engine project
The main idea of this project – to implement the solution that can be used to: construct custom network mesh or distributed network cluster structure with several relations types between nodes, formalize the data flow processing goes from upper node level central source point to down nodes and backward, formalize the management requests handling from multiple source points, support native reducing of multiple nodes results (aggregation, duplicates elimination, sorting and so on), internally... -
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ADDA is a software package for finding domains in protein sequences. ADDA has moved to github (https://github.com/AndreasHeger/adda)
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CDPOPgui
GUI Frontend for CDPOP
CDPOPgui is a GUI Frontend for CDPOP What is CDPOP? CDPOP (Cost Distance POPulations) is a spatially-explicit simulator of gene-flow in complex landscapes to explain observed population responses and provide a foundation for landscape genetics. The program implements individual-based population modeling with Mendelian inheritance on a resistant landscape. Simulation begins with an initial homogeneous population and followed by divergence through time as functions of individual based... -
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allink
Software for data analysis, image processing, simulations, solver.
Collection of utilities based on two basics classes: Matematica and VarData. Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures. Addyn) perform molecular dynamics and Monte Carlo simulations and has a solver for 4th oder PDE. Avvis) perform all the... -
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tigreBrowser is a web-based browser for ranking results from R/Bioconductor package tigre and similar tools. It allows easy viewing, sorting and filtering of visualisations of models produced by tigre.
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Automatic Compound Processing (AuCoPro)
Automatic compound splitting and semantic analysis of compounds
The central problem to be addressed in this project concerns a multidisciplinary (linguistics and computational linguistics) investigation into sharing of knowledge and resources between closely-related languages, specifically relating to the automatic processing of compounds. Specifically, we will explore the possibility to create new knowledge about closely-related languages, and efficiently develop additional, more advanced resources for (a) compound segmentation; and (b) the semantic... -
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ktree
clustering, machine learning, algorithms
This project has moved to github at http://lmwtree.devries.ninja. -
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pyUSV
Ultrasonic Speckle Velocimetry
Treat output from ultrasound transducer(s) in order to obtain local velocities in a (complex) fluid ; and further analysis. -
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Physic Research Tools
Python, Physics, PyQt, Software, Data adquisition, Spectroscopy, UV
Como técnico en informática en un Instituto de Física con el tiempo surgió la necesidad de tener que crear distintas piezas de software para ir resolviendo situaciones diarias. En este proyecto iré agregando pequeños programas en Python 2.7 que voy escribiendo para dar soluciones a algunos de los problemas que surgen día a día en el laboratorio, como ser comunicación con algunos dispositivos o rutinas para ordenar o modificar datos de forma recursiva algunos cálculos matemáticos, creación... -
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Ganglia Job Monarch
Batch system monitoring and archiving
Job Monarch is an addon to the Ganglia Monitoring System that provides batch job monitoring and archiving plus a graphical overview of clusters and assorted batch systems. Fully supported batch system: Torque, PBS and SLURM. Experimental: LSF, SGE -
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Quantum Chemistry Import Tool is a django application that parses the output file of quantum chemistry software as NWChem, Octopus, Gaussian, etc. The result can be saved in relational database.
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We aim to develop a transformative computational method for automatic discovery of a set of dynamical rules that best captures both state transition and topological transformation in the data of spatio-temporal evolution of a complex network.
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Event based simulator that allow to yield from nested function. Implemented using greenlet and standard thread python library.
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dna-barcode
Find and analyze barcodes in DNA sequence files
Find and analyze barcodes in DNA sequence files -
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A collection of bioinformatics-related software created by members of Cancer Research UK (possibly among others).
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Modbus Traffic Generator
Open Source SCADA Security Evaluation Tool
Modbus traffic generator is a tool written in Python, and uses Scapy libraries to evaluate the effectiveness of SCADA security solutions. The tool generates Modbus/TCP packets, where the characteristics of these packets are extracted from Snort NIDS Modbus rules. The generated packets trigger related alerts in Snort NIDS. It is useful to anybody interested in evaluating and testing their SCADA security solution or other people solutions. Requirements: * Python 2.x or higher * Scapy *... -
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PyGAO
Genetic Algorithm Optimization for Python
A simple interface for performing genetic algorithm optimization for numerical problems. I am starting with a stripped-down version, where a solution can be described using a single vector of float numbers. Eventually, I will expand to more generic data structures and add multiple-species search options. For the time being, I have no plans of developing a GUI. For now, this is strictly a computational module. In addition to the standard Python libraries, PyGAO uses numpy. -
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InproTK
An Incremental Spoken Dialogue Processing Toolkit
InproTK is an Incremental Spoken Dialogue Processing Toolkit, that is, a toolkit to help you build dialogue systems that listen and talk incrementally, allowing for advanced interactional behaviour. Please see our Wiki for more information: http://sourceforge.net/p/inprotk/wiki/ -
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Language Constructor
Complete tool for constructing/manipulating languages in digital form
With this tool you can easily design a new language, digitize an existing one or incrementally reconstruct an ancient language. It allows for free experimentation of all aspects of the language, so it does not have to be made consistent on paper first. You can edit script, syntax, grammar, morphology, lexicon and phonology, as well as write documents in the language, as it might be too complex to be handled by current font technology. The information is stored in xml format for easy... -
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Fast Artificial Neural Network Library is a free open source neural network library, which implements multilayer artificial neural networks in C with support for both fully connected and sparsely connected networks. Cross-platform execution in both fixed and floating point are supported. It includes a framework for easy handling of training data sets. It is easy to use, versatile, well documented, and fast. Bindings to more than 15 programming languages are available. An easy to read...
