Search Results for "python tool" - Page 57
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Showing 2383 open source projects for "python tool"
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pipasic
pipasic: Protein Abundance Correction in Metaproteomic Data
Metaproteomic analysis allows studying the interplay of organisms or functional groups and has become increasingly popular also for diagnostic purposes. However, difficulties arise due to the high sequence similarity between related organisms. Further, the state of conservation of proteins between species can be correlated with their expression level which can lead to significant bias in results and interpretation. These challenges are similar but not identical to the challenges arising in... -
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huhamhire-hosts
hosts for Internet Freedom
Since the governments of some countries are using the blocking the internet access to several websites and web service providers which includes some world famous sites like Google, YouTube, twitter, Facebook, and Wikipedia etc., we designed this tiny utility in order to help people getting through the Internet blockade. Hosts Setup Utility provides basic tools to manage the hosts file on current operating systems. It also provides both support for Graphical Desktop environment with... -
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ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW....
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dhcpclientsimulator
Both a DHCP client simulator and a DHCP attack tool.
#DHCP Client Simulator For the DHCP client simulator mode, assuming there is an active DHCP server on the network, the user can choose to simulate any number of DHCP clients. All DHCP leases obtained from the server are saved in the DHCP_Leases.txt file, which is automatically generated by the program. The user can also release the leases received from the server, either one by one (by IP address) or all of them at once. After releasing all the addresses, the DHCP_Leases.txt file is... -
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isbntools
A command line tool to extract, transform and get metadata for ISBNs
As of 2015-06-02, this project is no longer under active development. -
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MicroView is a 2D/3D image viewer and analysis tool. It is written in Python and uses VTK for all of its graphical capabilities.
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting... -
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CONTIGuator is a Python script for Linux environments whose purpose is to speed-up the bacterial genome assembly process and to obtain a first insight of the genome structure using the well-known artemis comparison tool (ACT).
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EasyRepo
Offline DVDs software repository builder for Ubuntu and derivatives
Easy Repo is a GUI tool for create APT repository on DVD disks for your Debian/Ubuntu system. It can be usefull to use Ubuntu Software Center without an internet connectivity. Program is written in python/GTK+ and considered to be portable to win/mac as well. -
Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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CCH
A genetics tool that identifies genomic regions of shared ancestry
Combinatorial Conflicting Homozygosity (CCH) uses dense Single Nucleotide Polymorphism (SNP) genotypes to identify regions of the genome inherited from a common ancestor among any or all subsets of a group. Analysis is rapid and can identify loci containing genes for dominant traits. CCH is robust to the presence of phenocopies and can detect undisclosed shared common ancestry. The associated publication regarding CCH may be accessed... -
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ADTEx
Aberration detection in tumour exome
Aberration Detection in Tumour Exome (ADTEx) is a tool for copy number variation (CNV) detection for whole-exome data from paired tumour/matched normal samples. -
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IncludeGraph
Determine which files get included in source files.
IncludeGraph is a tool written in Python that performs code analysis on a C and C++ source tree. It can determine the inclusion path for a header file as well as provide charts about which headers are the most included ones or which files include the most headers. It also has a limited knowledge of conditional preprocessor constructs by implementing a subset of the functionality of the C preprocessor. -
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VEEL
Visualize Estimates of Exponential Learning
VEEL is a simple tool to make plots of exponential learning curves for behavioral experiments. It also provides parameter estimates in output files. -
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UniPyRange
Tool to fetch protein/DNA truncation constructs from Uniprot DB
Very simple python script which saves you the pains of counting the amino acids/DNA bases in fasta files from the Uniprot and NCBI RefSeq Database (1, 2). Lets say you want the amino acid sequence of range 128-387 from a 1000 amino acid protein - this script will help you to avoid counting mistakes by just showing you the specified sequence in amino acids and coding DNA base pairs (ideal for amplification primer design) of a specified Uniprot ID. - Requires BioPython (3) and Bioservices... -
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VADER
Lexicon and rule-based sentiment analysis tool
VADER (Valence Aware Dictionary and sEntiment Reasoner) is a lexicon and rule-based sentiment analysis tool designed for analyzing the sentiment of text, particularly in social media and short text formats. It is optimized for quick and accurate analysis of positive, negative, and neutral sentiments. -
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LipidWrapper
Create lipid-bilayer models of arbitrary geometry.
LATEST VERSION NOW LOCATED AT http://git.durrantlab.com/jdurrant/lipidwrapper As ever larger and more complex biological systems are modeled in silico, approximating physiological lipid bilayers with simple planar models becomes increasingly unrealistic. When building large-scale models of whole subcellular environments, models of lipid membranes with carefully considered, biologically relevant curvature are essential. LipidWrapper, written by Jacob Durrant in the lab of Rommie E. Amaro,... -
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StoryText (formerly PyUseCase) is an unconventional GUI testing tool, with support for PyGTK, Tkinter, wxPython, Swing, SWT and Eclipse RCP. Instead of recording GUI mechanics directly, it asks the user for descriptive names and hence builds up a "domain language" along with a "UI map file" that translates it into the current GUI layout. The point is to reduce coupling, allow very expressive tests, and ensure that GUI changes mean changing the UI map file but not all the tests. Instead of an...
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simple line command tool send several trames over TCP lan in AF_INET SOCK_STREAM and return elapsed times. usage: (pytestlan) ser IP PORT usage: (pytestlan) cli IP PORT nb_of_loop data_size example server: python pytestlan.py ser localhost 50000 example server: pytestlan.pyc ser 192.168.0.37 50000 example client (windows): pytestlan.exe cli 192.168.0.12 50000 1000 100 tested on linux, WinXP, Win7 Seven, 2008 Server.
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LXCF - LXC Facility
LXCF (LXC Facility) generates LXC container of full OS environment.
LXCF (LXC Facility) is a tool that generates full OS environment as LXC virtual environment. http://lxcf.sourceforge.jp/index.html.en - It is based on libvirt-lxc - It can generate containers in a short time (in a few minutes each even if it is long). - It can manage a lot of containers. - It supports dynamic resource control of containers. - To use containers for a long term (a few years or more), you can update software on each container from the host. LXCF currently supports... -
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Robo-Interface
Robo-Interface is a GUI for Robocopy (Robust File Copy).
Robo-Interface is a GUI or user interface for Robocopy the command line tool from Microsoft and includes all the switches except /UNICODE :: output status as UNICODE. It will build the command string that you can copy and paste on the CMD (Command Prompt), or you can also run it from the application by clicking on the button "Run CMD" or copy the command string to the clipboard by clicking on the button "Copy". You can save job files, and they will display on the jobs table where you can... -
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pyWeb Literate Programming Tool
Literate Programming in pure Python
pyWeb is a Literate Programming tool that will work with any markup language and any programming langauge. The idea is to allow you to create great documentation with as constraints or limitations. -
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Aqualid
General purpose build system
General purpose build tool. Key features: Flexible and scalable for large projects Dynamic dependency graph Batch build support Distributed build scripts (no fixed project structure) Support any build target types (files, strings, URLs, remote resources etc.) Conditional options Scons like build scripts (but don't compatible) -
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helenos
Web based GUI tool to manage your data stored in Apache Cassandra
Helenos is a free web based environment that simplifies a data exploring & schema managament with Apache Cassandra database. -
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Sojourner's Encounter Calculator
Simple calculator to help with the creation of D&D 5E encounters.
This is a simple tool intended to be used during the creation of D&D 5E encounters. It is designed to be used in conjunction with the Monster Manuel and follows the encounter guidelines described in the Dungeon Masters Guide. -
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DR14 T.meter
Compute the DR14 of a given audio file according to the procedure desc
Introduction to DR14 T.meter DR14 T.meter is a free and opens source command line tool for computing the Dynamic Range of your music according to the procedure used in the off-line meter released by the Pleasurize Music Foundation. This tool is very useful to measure how is loud your music and for understanding that a good quality album always has also a good dynamic, and it's also useful for understanding the effects of the so called loudness war. Dr14 t.meter is released under the...
