Search Results for "level set methods" - Page 5

One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods. ...

...CDSbank also stores Genbank feature annotation, a flag to indicate incomplete 5’ and 3’ ends, full taxonomic data, and a heuristic to rank the scientific interest of a species. This rich information allows fully automated data set preparation with a level of sophistication that meets or exceeds manual processing. Defaults ensure ease of use for typical scenarios while allowing great flexibility when needed. Access is via a free web service at http://hazeslab.med.ualberta.ca/CDSbank/. SourceForge code can be used to build a local installation.

...We intend to extend the system from gene-level to variant-level prioritization, by exploiting the variant data in the MSV3D database. Contact: bmhoan@gmail.com or walter.vincent.fr@gmail.com

pyproperties provides support for properties files in Python. Being written entirely from scratch it is not in any way derived from java.util.Properties. There are projects which try to mimic j.u.P. This is not one of them. It can read, parse and store properties files but also provides some more advanced functionality like manipulating comments and type-guessing.

The Demon of Gar-noth has risen. The whole land is in danger! You bravely set out to face it. You must defeat the demon and his forces. *** In the side-scrolling arcade game you must kill monsters, collect gems, and cast spells to level up and beat The Demon of Gar-noth (and bonus levels!). *** Uses the python library pygame (pygame.org)

Script to improve the PlayStation 3 performance when using linux. Works with official otherOS and other methods for booting linux (asbestOS, bootOS, otherOS++...) and as well as a wide range of distros.

This is a python based UI application that can rename a part of a set of files inside a directory based on the provided regular expression. This gives a lot more flexibility compared to other renaming files since it used grouping principle. This had two level of applying the rename, first stage shows who it will be when you rename it, if you are fine with the change you can make it permanent by clicking commit.

The Stanford Machine Learning Course Exercises repository contains programming assignments from the well-known Stanford Machine Learning online course. It includes implementations of a variety of fundamental algorithms using Python and MATLAB/Octave. The repository covers a broad set of topics such as linear regression, logistic regression, neural networks, clustering, support vector machines, and recommender systems. Each folder corresponds to a specific algorithm or concept, making it easy...

Tidal Analysis Program in PYthon (TAPPY) uses the least squares optimization function from scipy to perform a harmonic analysis (calculate amplitude and phases of a set of sine waves) of a hourly time series of water level values.

This Project aims to create a Linux Distribution focused on the IBM zOS system, it includes a set of Mainframe tools, based all in Linux Kernel modules, C and Python. -MainFrame Access Methods -ISPF menus -REXX scripting -RACF security -JCL Batch Job

A set of python programs for forward modelling of marine notch formation, along with an pseduo-inverse model for obtaining relative sea level curves from notch data.

Graphically simple but operatively complex, in this game the goal is to collect enough resources to complete your rectangle before the opponent. Be sure to get the game data, rf2.py, and rf2-conf.py

gnu4u provides defined set of (GNU-)tools for development C and C++ applications. This tool set is independent of the OS's patch level, is available for different systems and provides the same development and runtime environment for those systems.

PyACTS as a set of Python based modules that provide a high level user interface to functionality available in the ACTS Collection: PyBLACS, PyPBLAS and PyScALAPACK.

Kefir is a code sketcher based on tepache that uses pygtk and libglade. Kefir creates a set of wrapper classes around the top level glade widgets in a glade file, to allow the programmer to concentrate on writing a program instead.

Doulos is a set of tools for rapidly developing n-tier distributed applications, with a framework for writing business methods, a protocol for accessing those methods, and frameworks for creating web and native user interfaces that utilize the methods.

pyCDK - A python wrapper around the Curses Development Kit. The CDK provides a set of high level widgets for curses applications.

plaindb is a plain text database package. It comprises the file format, and a set of modules on Perl, Tcl and python to access the databases, plus a basic shell interface. Higher level interfaces are also included for local (GUI) and web access.

The Tk to HTML converter presents a set of standard TCL-level Tk APIs, but instead of creating an X11 window, it outputs HTML forms which reproduce as closely as possible the original Tk user interface. Tk to HTML Is intended to let you "port" existing

trimAl can consider several parameters, alone or in multiple combinations, in order to select the most-reliable positions in the alignment. These include the proportion of sequences with a gap, the level of residue similarity and, if several alignments for the same set of sequences are provided, the consistency level of columns among alignments. Moreover, trimAl allows to manually select a set of columns and sequences to be removed from the alignment. trimAl implements a series of automated algorithms that trim the alignment searching for optimum thresholds based on inherent characteristics of the input alignment, to be used so that the signal-to-noise ratio after alignment trimming phase is increased. ...

Monk is an open source low code programming environment to reduce the cognitive load faced by entry level programmers while catering to the needs of Expert Deep Learning engineers. There are three libraries in this opensource set. - Monk Classiciation- https://monkai.org. A Unified wrapper over major deep learning frameworks. Our core focus area is at the intersection of Computer Vision and Deep Learning algorithms. - Monk Object Detection - https://github.com/Tessellate-Imaging/Monk_Object_Detection. ...