Search Results for "level set methods"
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Showing 16 open source projects for "level set methods"
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Qiskit
Qiskit is an open-source SDK for working with quantum computers
Qiskit [kiss-kit] is an open-source SDK for working with quantum computers at the level of pulses, circuits, and application modules. When you are looking to start Qiskit, you have two options. You can start Qiskit locally, which is much more secure and private, or you get started with Jupyter Notebooks hosted in IBM Quantum Lab. Qiskit includes a comprehensive set of quantum gates and a variety of pre-built circuits so users at all levels can use Qiskit for research and application development. ... -
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bidict
The bidirectional mapping library for Python
...Implemented in concise, well-factored, fully type-hinted Python code that is optimized for running efficiently as well as for long-term maintenance and stability. Extensively documented. 100% test coverage running continuously across all supported Python versions. Enterprise-level support for bidict can be obtained via the Tidelift subscription. One of the best things about bidict is that it touches a surprising number of interesting Python corners, especially given its small size and scope. Choose a tier and GitHub handles everything else. Your GitHub sponsorship will automatically go on the same bill you already have set up with GitHub, so after the one-click signup, there’s nothing else to do. -
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Hyperfit
Software for calibration of hyperelastic constitutive models
This software allows to fit various hyperelastic constitutive models. Optimal set of parameters of a selected constitutive model can be identified. Many advanced setting, methods and corrections are available to get optimal results according to the user's preference. -
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Snap7
32/64 bit multi-platform Ethernet S7 PLC communication suite
Snap7, through three specialized components: Client and the inedited Server and Partner, allows you to definitively integrate your PC based systems into a PLC automation chain. Designed to transfer large amounts of hi-speed data in industrial facilities, it scales easily, down to small Linux Arm boards such as Raspberry PI. Hi level object oriented wrappers are provided, currently C/C++, .NET/Mono, Pascal, LabVIEW, Python with many source code examples. Very easy to use, a full... -
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FractalRenderingApp
Lightweight app for visualization of Mandelbrot and Julia set
Source code is available on https://github.com/MarkoLeskovar/FractalRenderingApp -
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OpenQASM
Quantum assembly language for extended quantum circuits
...Quantum programs are described using the measurement-based quantum circuit model with support for classical feed-forward flow control based on measurement outcomes. OpenQASM presents a parameterized set of physical logic gates and concurrent real-time classical computations. Its main goal is to serve as an intermediate representation for higher-level compilers to communicate with quantum hardware. Allowances have been made for human usability. In particular, the language admits different representations of the same program as it is transformed from a high-level description to a pulse representation. -
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itom
itom - an Open Source Measurement, Automation and Evaluation Software
...Therefore, the software has to be able to communicate with a wide range of different hardware systems, such as cameras or actuators and should provide a diversified and as complete as possible set of evaluation and data processing methods. Additionally, the rapid prototyping of modern measurement and inspection setups requires a system, where parameters or components can easily be changed at runtime, necessitating the availability of an embedded scripting language. Finally, when operating a measurement system, it is also desirable to extend the graphical user interface by system adapted dialogs and windows. ... -
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GXSM
Scanning Probe Microscopy Controller and Data Visualization Software
GXSM -- Gnome X Scanning Microscopy: A multi-channel image and vector-probe data acquisition and visualization system designed for SPM techniques (STM,AFM..), but also SPA-LEED/LEED/LEEM data analysis. A plug-in interface allows any user add-on data-processing and special hardware and instrument support. Latest: NC-AFM and related explorative methods as SQDM can be configured. High-Speed external PAC-PLL hardware option with digital DSP link. Based on several hardware options it supports a commercially available DSP hardware and provided also Open Source Code for all the low level signal processing tasks and instrument controls in a most flexible and adaptable manner. ... -
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CBMPy
PySCeS Constraint Based Modelling
...Its architecture is both extensible and flexible using data structures that are intuitive to the biologist while transparently translating these into the underlying mathematical structures. . CBMPy implements popular analyses such as FBA, FVA, element/charge balancing, network analysis and model editing as well as advanced methods developed for the ecosystem modelling. CBMPy supports user interaction via: - interactive console or as a library for advanced use - GUI, visual representation of the model, analysis methods - a SOAP based webAPI exposes high level functionality via web services -
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PyRobot
An Open Source Robotics Research Platform
PyRobot is a high-level robotics API that simplifies controlling real and simulated robots through a consistent Python interface. Instead of fighting ROS internals, you call clear methods for things like base navigation, arm manipulation, and camera capture, and PyRobot handles the plumbing. It was built to make research repeatable on accessible platforms—most notably low-cost mobile manipulators—while still scaling to richer hardware. -
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GASiC
Genome Abundance Similarity Correction
One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods. ... -
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CDSbank
multi-sequence extraction, filtering & formatting
...CDSbank also stores Genbank feature annotation, a flag to indicate incomplete 5’ and 3’ ends, full taxonomic data, and a heuristic to rank the scientific interest of a species. This rich information allows fully automated data set preparation with a level of sophistication that meets or exceeds manual processing. Defaults ensure ease of use for typical scenarios while allowing great flexibility when needed. Access is via a free web service at http://hazeslab.med.ualberta.ca/CDSbank/. SourceForge code can be used to build a local installation. -
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GEPETTO - Gene Prioritization in Java
GEPETTO (GEne Prioritization ExTended TOol)
...We intend to extend the system from gene-level to variant-level prioritization, by exploiting the variant data in the MSV3D database. Contact: bmhoan@gmail.com or walter.vincent.fr@gmail.com -
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Tidal Analysis Program in PYthon (TAPPY) uses the least squares optimization function from scipy to perform a harmonic analysis (calculate amplitude and phases of a set of sine waves) of a hourly time series of water level values.
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A set of python programs for forward modelling of marine notch formation, along with an pseduo-inverse model for obtaining relative sea level curves from notch data.
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trimAl can consider several parameters, alone or in multiple combinations, in order to select the most-reliable positions in the alignment. These include the proportion of sequences with a gap, the level of residue similarity and, if several alignments for the same set of sequences are provided, the consistency level of columns among alignments. Moreover, trimAl allows to manually select a set of columns and sequences to be removed from the alignment. trimAl implements a series of automated algorithms that trim the alignment searching for optimum thresholds based on inherent characteristics of the input alignment, to be used so that the signal-to-noise ratio after alignment trimming phase is increased. ...
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