Search Results for "files" - Page 48
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Showing 2198 open source projects for "files"
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Virus QSP Modeling
C++ and Python code for simulating RNA virus replication
...Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files. -
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Phobos Application
Software for recording rodents' behavior during behavioral tests
...Phobos provides the possibility to easily calculate all possible experimental parameters at once immediately after the evaluation of the fear/anxiety level of each animal. All extracted files can be readily combined to one in order for statistical analyses to be performed. If you use Phobos for your research, please cite: Telonis AG, Margarity M.Phobos: a novel software for recording rodents' behavior during the thigmotaxis and the elevated plus-maze test. Neurosci Lett (2015) doi: 10.1016/j.neulet.2015.05.045 Paper link: http://www.sciencedirect.com/science/article/pii/S0304394015004103 For support, questions or feedback: atelonis@users.sourceforge.net -
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GimpPy uses img maps & an img as the input, output is a report.py file used to generate PDFs, the out files may run solo or chained together to make more complex multi page reports. Input required is a dict with vals for flds you have mapped on your img.
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binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyzing ligand binding. The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. As output, BINANA describes ligand binding. NOTE: The latest version of BINANA is now hosted at http://git.durrantlab.com/jdurrant/binana . Versions on SourceForge are not up to date. -
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privacyidea
two factor authentication management system
privacyIDEA is a management and authentication system for two factor authentication. You can use OTP tokens, OTP cards, SMS, Smartphone Apps to incorparte the second factor. It can even manage SSH keys and supports Offline OTP. The latest version can manage and enroll user certificates. Its modular design makes it easily enhancable. It runs on Linux. Applications and workflows can be connected to privacyIDEA hence enabling two factor authentication in your system logon, web... -
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CSV F-Curve Importer for Blender
This is a Python script to import a CSV file to Blender f-curves.
This is a Python script for Blender 2.5x and it imports a CSV file into Blender and creates f-curves. This project has just started, please wait for a while. Please go to the page given below for the information of how to start to use this and its details. -
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wd2epub
wd2epub creates epub file from the set of html files
Set of python scripts to create epub files from a copy of website in your disk (e.g. by wget). -
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Syalphale
A rouge-like that uses your files to base its world on.
Syalphale is a rouge-like that bases it's the enemies in each level on the files that you have. For example if you have "log.txt", "A_history_of_cheese", and "cat.jpg" in your home folder then you will find enemies named "log.txt", "A_history_of_cheese", and "cat.jpg" in that folder. The type of the enemy is based on the first letter of that file's name. Thus you will an "l", "A", and a "c" type enemy on your home folder level. -
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...ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract
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**(9 march 2016) this project is continued on github : http://jaapkroe.github.io/polypy ** Python script to analyze (shortest-path) rings in structures read from xyz-files. It can be useful for example to identify defects in crystal structures or molecules.
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netcfgtoolssh
Python script for pushing the same configuration on multiple devices.
...The script reads the IPs of the devices from the NETWORK_IP file, then gets the SSHv2/Telnet credentials from the SSH_USERPASS file and sends the commands you enter in the CMD_FILE file to all the devices. The script also checks if all the needed files exist, if all the IP addresses are valid and if all the devices are reachable. Tools used: Python 2.7.3, GNS3, Linux. -
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netcfgtooltelnet
Python script for pushing the same configuration on multiple devices.
...Telnet username/password parameters are configured within the script. This feature can be further customized to prompt the user for them or read them from a file. The script also checks if all the needed files exist, if all the IP addresses are valid and if all the devices are reachable. Tools used: Python 2.7.3, GNS3, Linux. -
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Airtime
Open source broadcast automation software for scheduling and playout
...Features include Smart Blocks, live assist modes, WAV, FLAC, AAC, MP3 and OGG support, fades, cues, playlists, programme calendar, Icecast, Shoutcast and Soundcloud integration, DJ and station manager roles, JQuery widgets, Liquidsoap playout, and a record and rebroadcast functionality. Powerful media archive features 'watch' folders to allow stations to magically synchronise files, auto-import files and has multiple directory support. Airtime is free to download, runs on Ubuntu and Debian, and users can interact with it through any web browser. Airtime now comes with an 'easy install' package. -
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huhamhire-hosts
hosts for Internet Freedom
...Users could use these tool to modify the hosts to visit specified websites or services blocked by ISP/government. Functions which help users to backup/restore hosts files are also provided. For more detailed information, please visit the website of this project. -
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It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search.
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Stat cvs/svn Code Change
stat. cvs,svn code changes and generate html report
It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search. It's the mirror project of CodeChangeViewer: http://sourceforge.net/projects/ccv/. -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade-defining polymorphism. This functionality has been implemented using the tabix tool on the server side, providing simple and rapid access to the information at each tree node, including informative SNPs stored in VCF-similar files. -
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Divpdf
A simple program with a graphical interface for splitting PDF files.
The program allows you to split large pdf files into separate parts, keeping each part in a separate PDF file. The program does not need to install more special dependence. Simply download and run the executable file exe. -
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egeXme
Simple Image and Executable Binder
egeXme is a simple and easy-to-use program that binds your images with executable files and convert them to an standalone image. Of course this is not a hacking program. This program just shows you how it is possible. -
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myCStock
An other free stock market software in C++/Python
...If you are searching for a stable and complete software, you may come back later on... At the moment, the documentation is available on the Wiki and the source codes contain a doxygen configuration files which must compiled after downloading the source. -
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RenApp
The File Renamer App
This Program renames files of specified extension in a specified directory with a common name and appended numbering This Program also removes backup files from Specified directories and sub-directories. -
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Garmin Connect Python Uploader
A python script to upload .tcx, .fit, and .gpx files to Garmin Connect
This project, gcpuploader, helps you to upload files created by your Garmin fitness GPS (.tcx, .fit, or .gpx files) to the Garmin Connect web site (connect.garmin.com) once they are extracted from the device. It was developed because of Garmin's utter lack of support for Linux OS. This Python project has been tested in a limited capacity in Python 2.6.5 under Linux and Python 2.7.2 under Windows XP as well. -
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theZoo
A repository of LIVE malwares for malware analysis and security
theZoo is a project created to make the possibility of malware analysis open and available to the public. Since we have found out that almost all versions of malware are very hard to come by in a way which will allow analysis, we have decided to gather all of them for you in an accessible and safe way. theZoo was born by Yuval tisf Nativ and is now maintained by Shahak Shalev. theZoo’s purpose is to allow the study of malware and enable people who are interested in malware analysis (or maybe... -
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IncludeGraph
Determine which files get included in source files.
IncludeGraph is a tool written in Python that performs code analysis on a C and C++ source tree. It can determine the inclusion path for a header file as well as provide charts about which headers are the most included ones or which files include the most headers. It also has a limited knowledge of conditional preprocessor constructs by implementing a subset of the functionality of the C preprocessor. -
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pythonProp is a collection of Python scripts designed to work with VOACAP, allowing users to create input files using a Graphical User Interface and plot output files.
