Showing 2502 open source projects for "command line"

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  • 1

    ARDEN

    Specificity Control for Read Alignments Using an Artificial Reference

    We introduce ARDEN (Artificial Reference Driven Estimation of false positives in NGS data), a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation.
    Downloads: 0 This Week
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  • 2

    epgstuff

    multisource epg collect & stream.

    EPG collecting and streaming software. The collection can be done from XMLTV files, DVB Adapter, Website or IP Streams.
    Downloads: 0 This Week
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  • 3

    NT42 Simple network traffic analyzer

    School assignment for a simple network traffic analyzer

    This project is an example for a application which captures network traffic, parses and display the results.
    Downloads: 0 This Week
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  • 4

    py_wx_gps

    Wx based GPS display

    Small app to interface with any NMEA-compliant GPS and give realtime readouts of NMEA data in a user-friendly form.
    Downloads: 0 This Week
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  • 5
    A Python programming environment providing memory sizing, profiling and analysis, and a specification language that can formally specify aspects of Python programs and generate tests and documentation from a common source.
    Downloads: 0 This Week
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  • 6
    dinkumsoftware
    All the FOSS content produced by Dinkum Software. Includes programs and libraries. Various Python, Perl, and Bash scripts/libraries.
    Downloads: 0 This Week
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  • 7

    wdtvscraper

    Media scraper for WDTV devices.

    Scrape themoviedb.org and thetvdb.com for metadata of movies and tv series stored on a WDTV device.
    Downloads: 1 This Week
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  • 8
    Black Spot Leaf Area Calculator

    Black Spot Leaf Area Calculator

    Automated leaf area estimation from scanned leaf images

    Black Spot is a free stand alone software and method to estimate leaf area from images of leaves captured using standard flatbed scanners. This easy to use software allows the user to batch process a large number of samples from multiple species with minimal user input.
    Downloads: 0 This Week
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  • 9
    w3af
    w3af, is a Web Application Attack and Audit Framework. The w3af core and it's plugins are fully written in python. The project has more than 130 plugins, which check for SQL injection, cross site scripting (xss), local and remote file inclusion and much more. This project has been migrated to github! See details in our project site: http://w3af.org/
    Downloads: 5 This Week
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  • 10
    A set of very optimized tools for indexing/querying huge genomes/files. Provided so far: a very fast exact mapper, and an unconstrained split-mapper
    Downloads: 0 This Week
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  • 11
    The Microsizing package includes 3 scripts, which are ran through wrapper.cmd of Sherpya (https://sourceforge.net/projects/winpe) . These will shrink the BartPE (http://www.nu2.nu/pebuilder) image by many MBs.
    Downloads: 0 This Week
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  • 12
    PyMbs has moved to Bitbucket: https://bitbucket.org/pymbs/pymbs PyMbs is a Python library for modelling holonomic multibody systems. It is able to generate simulation code for Python, Modelica and Matlab.
    Downloads: 0 This Week
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  • 13

    HPeak

    A HMM-based algorithm for defining enriched regions from ChIP-seq data

    HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl...
    Downloads: 0 This Week
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  • 14
    asset management and provisioning made easy! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!IMPORTANT STUFF!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! the code repository has moved to: https://github.com/downneck/mothership !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!IMPORTANT STUFF!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
    Downloads: 0 This Week
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  • 15

    Fix Skype

    Fix Skype fixes future timestamps in the Skype messages database.

    Fix Skype is a python script and Win32 binary that is used to fix "future" timestamps in the Skype message database, such as those caused by the end of DST or by dual-booting a Linux system with time set to UTC from anywhere west of GMT. Essentially, you feed it your username and the number of hours by which some timestamps are in the future, and it subtracts that amount of time from any timestamp greater than "now".
    Downloads: 0 This Week
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  • 16
    Charm is a full-featured, cross-platfom blogging client for LiveJournal, Atom (Movable Type, Blogger), and MetaWeb (WordPress). It is console-based, all-text, and can be used entirely from the command line. It is written in Python.
    Downloads: 0 This Week
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  • 17
    Analyzes programs (and projects) written in Cobol and generates information (HTML) for its easy reading, understanding and analysis.
    Downloads: 0 This Week
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  • 18
    Software Management Tools (smtools) for code hosted on Mercurial repositories.
    Downloads: 0 This Week
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  • 19

    BUP Extractor

    Unpack quarantined files from McAfee AV

    McAfee VirusScan 8.7/8.8 packs and XORs malware to prevent the system from being re-infected and being re-detected by future AV scans. This tool is built using Python and extracts the malware into a folder with the information about the detection.
    Downloads: 0 This Week
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  • 20

    Impossameule

    Python command line tool to access an online online things ressource

    Client. Allows to store and retrieve information from the Impossameule server using python. impossameule.py is online help impossameulle-submit.py is for uploading information impossameule-remove.py does not do the contrary, since it does not retrieve. It deletes. impossameule-list do the retrieving job impossameule-tag do the same, but with a convenient interface for more categorized results Please note that the server side is written in php not free due to various online code...
    Downloads: 0 This Week
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  • 21

    SMPTE 2022-1 library for VLC & co

    Optimized and cross platform SMPTE 2022 FEC library in C, Python, Java

    Project moved to GitHub. https://github.com/davidfischer-ch/smpte2022lib
    Downloads: 0 This Week
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  • 22

    DynaFabric

    Manage existing clusters of machines efficiently via SSH.

    DynaFabric is an SSH based command dispatching and systems management framework, designed for easy implementation on existing networks. It allows you to configure SSH key based authentication, and centrally dispatch commands, manage installed software, maintain services, and enforce policies across your systems. DynaFabric is designed to be platform agnostic; support is being developed for FreeBSD, OpenBSD, NetBSD RHEL/CentOS, Ubuntu, Solaris 10, Solaris 11, and Illumos.
    Downloads: 0 This Week
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  • 23

    RAWR - Rapid Assessment of Web Resources

    A web interface enumeration tool for simplifying red team reporting.

    Introducing RAWR (Rapid Assessment of Web Resources). There's a lot packed in this tool that will help you get a better grasp of the threat landscape that is your client's web resources. It has been tested from extremely large network environments, down to 5 node networks. It has been fine-tuned to promote fast, accurate, and applicable results in usable formats. RAWR will make the mapping phase of your next web assessment efficient and get you producing positive results faster!
    Downloads: 0 This Week
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  • 24

    TxtStyle

    Command-line tool for colorizing log files based on regex.

    TxtStyle is a command line tool colorizing output of console programs. It makes it easier to visually scan log files or can simply be used to prettify output of console applications.
    Downloads: 0 This Week
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  • 25
    GEPETTO - Gene Prioritization in Java

    GEPETTO - Gene Prioritization in Java

    GEPETTO (GEne Prioritization ExTended TOol)

    GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein...
    Downloads: 0 This Week
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