Search Results for "research" - Page 41
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Showing 2867 open source projects for "research"
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xMariner
xMariner automates the analysis of MALDI spectra and report generation
xMariner automates the analysis of MALDI spectra and report generation -
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TagCalc
Calculates groups of aminoacids that adjust to a mass difference
Calculates groups of amino-acids that adjust to a mass difference (Python 3 version). -
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Python4Proteomics Course
Python course for Proteomics analysis
Python course (in Spanish) for Proteomics analysis using basically Jupyter NoteBooks. For more information, you can have a look at the readme.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/p4p/code/ci/default/tree/readme.md -
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Xtraq
Xtraq extracts iTRAQ data from .ANZ Peaks results files
Xtraq extracts iTRAQ data from .ANZ Peaks results files. -
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DeepLearning
Deep Learning (Flower Book) mathematical derivation
...At the same time, it also introduces deep learning techniques used by practitioners in the industry, including deep feedforward networks, regularization, optimization algorithms, convolutional networks, sequence modeling and practical methods, and investigates topics such as natural language processing, Applications in speech recognition, computer vision, online recommender systems, bioinformatics, and video games. Finally, the Deep Learning book provides research directions covering theoretical topics including linear factor models, autoencoders, representation learning, structured probabilistic models, etc. -
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TCellXTalk
TCellXTalk Web-App from LP CSIC/UAB
TCellXTalk is a comprehensive database of experimentally detected phosphorylation, ubiquitination and acetylation sites in human T cells. The web-app at www.TCellXTalk.org makes TCellXTalk accessible from Internet, and enables the in silico prediction of potential co-modified peptides to facilitate their experimental detection, using targeted or directed mass spectrometry, for the study of protein post-translational modification cross-talk. More detailed information on TCellXTalk and... -
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Retro
Retro Games in Gym
RETRO (Retrieval-Enhanced Transformer) is a large language model architecture developed by OpenAI that augments transformer models with a retrieval mechanism. Instead of relying solely on learned parameters, RETRO retrieves relevant documents from a large external database during inference, allowing it to ground responses in external knowledge. This design improves factual accuracy, reduces hallucinations, and enables smaller models to perform comparably to much larger ones by leveraging... -
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KimPeptid
Analyzes Peptides Properties (Python 3 version)
Analyzes Peptides Properties (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/kimpeptid3/code/ci/default/tree/README.md -
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MADDPG
Code for the MADDPG algorithm from a paper
...Researchers can use it to reproduce the experiments presented in the paper, which demonstrate how agents learn behaviors such as coordination, competition, and communication. Although archived, MADDPG remains a widely cited baseline in multi-agent reinforcement learning research and has inspired further algorithmic developments. -
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HyLiTE
Hybrid Lineage Transcriptome Explorer
HyLiTE (Hybrid Lineage Transcriptome Explorer) analyzes high-throughput transcriptome data from allopolyploid species. Allopolyploidy describes the formation of a new hybrid organism from the union of two or more different parents. Allopolyploid species carry multiple copies of each gene (homeologs), which often exhibit unusual expression patterns. Homeolog expression levels can technically be determined from next generation sequencing data (RNA-seq), but in practice, assigning reads to... -
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LymPHOS2
LymPHOS2 Web-App
LymPHOS2 is a web-based Application at www.LymPHOS.org containing peptidic and protein sequences and spectrometric information on the PhosphoProteome of human T-Lymphocytes. - Nguyen, TD., Vidal-Cortes, O., Gallardo, Ó., Abian, J., Carrascal, M., LymPHOS 2.0: an update of a phosphosite database of primary human T cells. Database 2015, 2015. DOI: 10.1093/database/bav115 - Carrascal, M., Ovelleiro, D., Casas, V., Gay, M., Abian, J., Phosphorylation analysis of primary human T lymphocytes... -
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GoodByeCatpcha
Solver ReCaptcha v2 Free
An async Python library to automate solving ReCAPTCHA v2 by images/audio using Mozilla's DeepSpeech, PocketSphinx, Microsoft Azure’s, Google Speech and Amazon's Transcribe Speech-to-Text API. Also image recognition to detect the object suggested in the captcha. Built with Pyppeteer for Chrome automation framework and similarities to Puppeteer, PyDub for easily converting MP3 files into WAV, aiohttp for async minimalistic web-server, and Python’s built-in AsyncIO for convenience. -
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Zat 1.0
Fast N-SAT solver for Windows 10
Zat is an Onagan project. It is a very fast sat solver for .cnf, .dimacs, ... Zat is an O(n^log(n)) time complexity algorithm, which is faster than O((1+e)^n) for e strictly positive. The space complexity is O(n). The version 1.0 is exclusively for Windows 10. -
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RL Baselines Zoo
A collection of 100+ pre-trained RL agents using Stable Baselines
...It offers tools for training, tuning, and evaluating RL algorithms across many standard environments, including MuJoCo, Atari, and robotics simulations. Designed for reproducible RL research and benchmarking, it includes scripts, hyperparameter presets, and best practices for training robust agents. -
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PyZgoubi is an interface to the Zgoubi particle tracking code written in python. It aims to ease the use of Zgoubi by providing a simple interface to create beam line elements and particles, and to automate running and analysing of simulations.
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NLP-progress
Repository to track the progress in Natural Language Processing (NLP)
...The main objective is to provide the reader with a quick overview of benchmark datasets and the state-of-the-art for their task of interest, which serves as a stepping stone for further research. To this end, if there is a place where results for a task are already published and regularly maintained, such as a public leaderboard, the reader will be pointed there. -
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APBS
Biomolecular electrostatics software
This software has moved to http://www.poissonboltzmann.org/. -
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Hénon map browser
Program for exploring the Hénon attractor
A Python program for exploring the Hénon attractor. For an explanation of what the Hénon attractor is please see Wikipedia (http://en.wikipedia.org/wiki/H%C3%A9non_map). With this program you can draw the Hénon attractor and interact with it in various ways. You can zoom in by selecting an area, vary the Henon parameters manually and even make animations with them. The functionality is demonstrated in a Youtube video. There is a help function included that explains in more detail how to use... -
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QtiPlot is a user-friendly, platform independent data analysis and visualization application similar to the non-free Windows program Origin.
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An Open Source IEC 61131-3 Integrated Development Environment, providing PLCOpen SoftPLC programming, CanOpen IO's, and SVG based HMI.
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VGGFace2
VGGFace2 Dataset for Face Recognition
VGGFace2 is a large-scale face recognition dataset developed to support research on facial recognition across variations in pose, age, illumination, and identity. It consists of 3.31 million images covering 9,131 subjects, with an average of over 360 images per subject. The dataset was collected from Google Image Search, ensuring a wide diversity in ethnicity, profession, and real-world conditions. It is split into a training set with 8,631 identities and a test set with 500 identities, making it suitable for benchmarking and large-scale model training. ... -
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DESC Pro
Discrete event simulation for solar cell production
The aim of the DESC Pro program is to try to capture the dynamics of modern solar cell production lines using discrete event simulation techniques. All process and transportation events within the whole line can in principle be included in the simulations, which gives the advantage that dynamic aspects such as planned maintenance and random micro-stops can easily be taken into account. -
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SCiDA Pro
Program for solar cell production data analysis
The purpose of the SCiDA Pro program is to help with processing solar cell production data. It has the following features: - Able to handle large data sets in a fast way (e.g. plotting 100k cell data takes a few seconds) - Easy data filtering - Easy generation of a data summary report - Extensive data plotting features - Cross-platform (Windows/Linux/MacOS) - Supports multiple languages -
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OpenMultiphysics
Application Integration for HPC Multiphysics
The OpenMultiphysics project is the home for community-driven development of application integration technologies designed to aid in the design and implementation of multiphysics simulation capabilities. Design and development in this project is driven by the Consortium for Open Multiphysics. Feel free to visit us at our GitHub site as well: https://github.com/IllinoisRocstar/IMPACT -
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epidaurus
tumor epigenetic database
Epidaurus is a collection of epigenetic datasets including transcription factor ChIP-seq, histone ChIP-seq, DNase-seq, FAIRE-seq, DNA methylation, etc. It also includes commonly used genome features (GC content, conservation) and RNA-seq. A user friendly interface has been developed to interrogate and visuzlize these datasets.
