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FociCounter is a simple and user-friendly program for analysis of gamma-H2AX foci. It allows to determine the number of foci in a single cell, a foci intensity as well as a cell intensity.
Use SASSIE to generate and manipulate large numbers of molecular structures and then calculate the SAXS, SANS, and neutron reflectivity profiles from atomistic structures. Use for intrinsically disordered proteins. We need alpha-testers and developers.
ConDEnSE (Confidential Data Enabled Statistical Exploration) will be a web-based environment for statistical analysis of confidential data from various database sources, based on Plone and R, and using the Jackknife method of confidentiality protection.
Everything you need to build production-ready agents and models. Access 200+ Google and third-party AI models and tools.
Gemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
MATmute is a MATLAB code mutation system targeted at developers of scientific software. The package includes a mutator, a MATLAB function to call the mutator and run the mutants, and some examples to demonstrate how to use the system.
SuperWillow is a Music Generation program. Artists have many influences which they have accumulated over the years by listening to countless pieces of music, this principle is reflected in SuperWillow.
Spyse is a software framework for building multi-agent systems. It allows Python developers to build distributed intelligent systems of multiple cooperative agents based on FIPA, OWL, SOA and many others. Spyse is designed for ease-of-use and fun.
Tandem mass spectral peptide identification and validation software, similar to X!Tandem, OMSSA, MyriMatch. Suitable for single hosts through large clusters. Written in Python for simplicity, with performance-critical sections in C++.
This project implements an algorithm for segmenting protein sequences into smaller meaningful blocks. The method is based on the pure statistical approach and it uses an analogy between proteins and natural language.
CitySpeed is a Python package that uses online mapping services to gather statistics on the efficiency and complexity of road networks. This can be used to create maps showing how fast you can drive around a particular city.
This project is started out of the idea to simulate simple creatures like game of live. The goal is to build up an multi processor/host environment to simulate the building of simple live in given world environments.
A Menu Kit to provide a common pythonic interface to the menu systems of common gui's. Menus built with this kit will work unchanged with Tkinter, Qt4, Gtk an wxPython. An aid for developers and a tool to assist cross gui support.
Make AsciiDoc part of your literate programming tool set. With eWEB you can weave and tangle literate programs written as AsciiDoc documents, using embedded WEB code snippets.
Chestnut package manager is a utility to handle executables and resource files in a transparent, platform independent and relocatable way. Its concept is similar to Apple bundles and Java archives.
GAI is a graphical GIS based front end to ANUGA which allows convenient and visual tools for setting up hydrodynamic models. GAI depends on ANUGA to run the models created by GAI.
Python Integrated Parallel Programming EnviRonment (PIPPER), Python pre-parser that is designed to manage a pipeline, written in Python. It enables automated parallelization of loops. Think of it like OpenMP for Python, but it works in a computer cluster
Add-ons to the ECMWF GRIB API.
This project is about developing and maintaining add-ons to the GRIB API, like language bindings or documentation.
The main GRIB API page is at http://www.ecmwf.int/products/data/software/grib_api.html