Search Results for "the command line" - Page 35
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Showing 2534 open source projects for "the command line"
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ProtPOS
Prediction of PROTtein Preferred Orientation on a Surface
ProtPOS is a self-contained, lightweight, and easy-to-use software package for predicting the preferred orientation of protein on a given surface upon initial adsorption. It searches quickly for the low energy protein poses in all translational and rotational degrees of freedom of the protein with respect to the surface using particle swarm optimization. Each successful run returns the lowest energy orientation of the protein on the surface in PDB format, which is readily used for MD... -
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Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.
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ASDRAD is a source code generator which reads a configuration file and generates *.c, *.h, makefiles etc. It's written in Python and uses templates. Output files are for AmigaOS and derivates like AROS and MorphOS.
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Theodore is a tool for semi-automated hybrid assembly of genomes, improving assembly quality by combining multiple information sources.
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SANET is a Network Management System for experts. It provides Command Line Interface for detailed target configuration with its own DSL (not only SNMP) and web 2.0 interface to display network status and topology maps.
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lshell is a shell coded in Python, that lets you restrict a user's environment to limited sets of commands, choose to enable/disable any command over SSH (e.g. SCP, SFTP, rsync, etc.), log user's commands, implement timing restriction, and more.
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AnimeTosho Batch Downloader
Little CLI tool to download batches from animetosho.org
It's a little Command Line Tool that automates the work of downloading batch uploads on animetosho.org. This script is NO where near STABLE. It might bug out from time to time. Don't forget to read the 'Bugs/Known Issue' Section in wiki. -
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Creates interactive plots of data lines over a time scale. Automatic detection of input format and scale will result in instantaneous results without any need for configuration.
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RTLSDR Scanner
A cross platform Python frequency scanning GUI for rtl-sdr
A cross platform Python frequency scanning GUI for USB TV dongles, using the OsmoSDR rtl-sdr library. In other words a cheap, simple Spectrum Analyser. More information can be found at: http://eartoearoak.com/software/rtlsdr-scanner An installer and standalone versions for Windows are located here: https://github.com/EarToEarOak/RTLSDR-Scanner/releases Sources are available on GitHub: https://github.com/EarToEarOak/RTLSDR-Scanner ** The up to date installer is no longer... -
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Yet Another Audio Feature Extractor is a toolbox for audio analysis. Easy to use and efficient at extracting a large number of audio features simultaneously. WAV and MP3 files supported, or embedding in C++, Python or Matlab applications.
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SNMP v1/v2c/v3 engine and apps written in pure-Python. Project moved to GitHub: https://github.com/etingof/pysnmp
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Klonwerk
advanced variability management tool
Klonwerk is an advanced and easy-to-use tool for reactive variability management and large-scale software reuse. It allows you to automatically clone and modify directories of textural or binary files (e.g. code, architecture, documentation), based on conceptual feature/decision models. -
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Awesome AWS
A curated list of awesome Amazon Web Services libraries
A curated list of awesome Amazon Web Services (AWS) libraries, open source repos, guides, blogs, and other resources. Featuring the Fiery Meter of AWSome. Each repo listed meets at least one of the following requirements, community-authored repo with 100+ stars, community-vouched repo with < 100 stars, official repo from aws or awslabs. 100+ stars for community repos is not a strict requirement, it only serves as a guideline for the initial compilation. If you can vouch for the awesomeness... -
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LBActive
LBActive is an dynamic and active load balancer health check system
LBActive is an dynamic and active load balancer health check system written in Python. Currently it supports only Nginx. LBActive dynamically adjusts the weight of a weighted round robin or ip hash Nginx load balancer by retrieving the current load on each backend server. The next release will move to a more modular approach to enable support for other load balancers that do not have dynamic and/or active checks and other types of backend checks if needed. -
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iMSAT represents a full update of the vcf2MSAT program. This command line python program allows for a user to use the polymorphism data generated using SAM- and BAM-tools and a .fasta alignment file to search for polymorphic microsatellite markers (MSATs or STRs). By identifying polymorphic makers, rather than simple repeat regions as previous programs have done, iMSAT greatly increases the speed at which polymorphic MSATs that can be identified -- saving researchers precious time and money. ...
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Bifrozt
High interaction honeypot solution for Linux based systems
NOTICE: The format of this project has been changed from ISO to using ansible and has been moved to GitHub. Github link: https://github.com/Bifrozt/bifrozt-ansible -
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Scaffold_Builder
Combining de novo and reference-guided assembly with Scaffold_builder
Scaffold_builder is software to order contigs generated by draft sequencing along a reference sequence. Gaps are filled with N's and small overlaps are aligned with Needleman–Wunsch algorithm and the consensus created with IUPAC codes. Scaffold_builder can help in the assembly and annotation of genomes by revealing what is missing and allowing targeted sequencing to close those gaps. (c) Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA. Please... -
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The SOSETSUKEN Engine
Need Vinesauce ROM Corrupter parameters? Yeah, we got that.
The SOSETSUKEN Engine is a handy tool for generating corruption parameters for use with the Vinesauce ROM Corrupter. You simply feed it the end byte found by Auto End, the level of corruption, and the amount of sets you want to generate. Its only throttle is the speed of your PC and the space left on your hard drive. This thing is fast, simple and small. It even puts out how long it takes to generate the requested sets at the very bottom of "params.txt" (the output file). Changelog: v1.2:... -
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COFILOS
A Development Framework for Coldfire
Contains a framework for Coldfire MCUs like 52254. The framework supports a Command Line Interface (CLI) that may work from Serial port, USB or ENET. The framework uses Processor Expert and IDE requirement is MCU Eclipse 10.4 from Freescale. Includes the FunkOS Realtime Operating System by Funkenstein Software Consulting, available at http://funkos.sourceforge.net Mainly it is a support package for the development board Perseus, but I have ported also the RTOS to MCF52233DEMO board. ... -
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Kiwi
A simple yet advanced text editor.
Kiwi is a full and refreshing text editor, providing 70% customisability. Kiwi offers the ability to turn on and off its' toolbar, number bar, status bar and scrollbars. Additionally, each scrollbar may be placed on the opposite side. Kiwi also offers the feature to change how the text wraps (no wrap, character wrap and word wrap), as well as the ability to change its transparency level from 1.0 to 0.1. You can also have it always stay at the top level. -
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pyCompry
A Python Script to Compress and Backup a Folder
This tool is featured with a very high compression mechanism hence useful in backing up large sized folders over a slow network, Or useful in reducing the backup size to a maximum possible. For detailed help, please refer to http://blogger.iamamazing.in/2016/01/automate-backup-with-python-script.html -
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Explore InSAR data and more
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in...