Search Results for "novel." - Page 3
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Showing 85 open source projects for "novel."
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1
GANformer
Generative Adversarial Transformers
This is an implementation of the GANformer model, a novel and efficient type of transformer, explored for the task of image generation. The network employs a bipartite structure that enables long-range interactions across the image, while maintaining computation of linearly efficiency, that can readily scale to high-resolution synthesis. The model iteratively propagates information from a set of latent variables to the evolving visual features and vice versa, to support the refinement of each in light of the other and encourage the emergence of compositional representations of objects and scenes. ... -
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Robust Video Matting (RVM)
Robust Video Matting in PyTorch, TensorFlow, TensorFlow.js, ONNX
...Unlike most existing methods that perform video matting frame-by-frame as independent images, our method uses a recurrent architecture to exploit temporal information in videos and achieves significant improvements in temporal coherence and matting quality. Furthermore, we propose a novel training strategy that enforces our network on both matting and segmentation objectives. This significantly improves our model's robustness. Our method does not require any auxiliary inputs such as a trimap or a pre-captured background image, so it can be widely applied to existing human matting applications. RVM is specifically designed for robust human video matting. -
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ReinventCommunity
Jupyter Notebook tutorials for REINVENT 3.2
This repository is a collection of useful jupyter notebooks, code snippets and example JSON files illustrating the use of Reinvent 3.2. -
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Old Photo Restoration
Bringing Old Photo Back to Life (CVPR 2020 oral)
...Unlike conventional restoration tasks that can be solved through supervised learning, the degradation in real photos is complex and the domain gap between synthetic images and real old photos makes the network fail to generalize. Therefore, we propose a novel triplet domain translation network by leveraging real photos along with massive synthetic image pairs. Specifically, we train two variational autoencoders (VAEs) to respectively transform old photos and clean photos into two latent spaces. And the translation between these two latent spaces is learned with synthetic paired data. ... -
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5
Nerfies
This is the code for Deformable Neural Radiance Fields
...Instead of assuming a static world, the method learns a canonical space plus a deformation field that maps changing poses or expressions back to that space during training. This lets the system generate photorealistic novel views of nonrigid subjects—faces, bodies, cloth—while preserving fine detail and consistent lighting. The training pipeline handles imperfect captures by modeling camera poses, exposure variations, and background segmentation, producing stable geometry and appearance. A set of utilities manages dataset preparation, pose estimation, and checkpoints so researchers can reproduce results on their own footage. ... -
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AliceMind
ALIbaba's Collection of Encoder-decoders from MinD
...Specifically, we pre-train StructBERT with two auxiliary tasks to make the most of the sequential order of words and sentences, which leverage language structures at the word and sentence levels, respectively. Pre-trained models for natural language generation (NLG). We propose a novel scheme that jointly pre-trains an autoencoding and autoregressive language model on a large unlabeled corpus, specifically designed for generating new text conditioned on context. It achieves new SOTA results in several downstream tasks. -
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TensorLayer
Deep learning and reinforcement learning library for scientists
TensorLayer is a novel TensorFlow-based deep learning and reinforcement learning library designed for researchers and engineers. It provides an extensive collection of customizable neural layers to build advanced AI models quickly, based on this, the community open-sourced mass tutorials and applications. TensorLayer is awarded the 2017 Best Open Source Software by the ACM Multimedia Society. -
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NLP Architect
A model library for exploring state-of-the-art deep learning
...NLP Architect is designed to be flexible for adding new models, neural network components, data handling methods, and for easy training and running models. NLP Architect is a model-oriented library designed to showcase novel and different neural network optimizations. The library contains NLP/NLU-related models per task, different neural network topologies (which are used in models), procedures for simplifying workflows in the library, pre-defined data processors and dataset loaders and misc utilities. The library is designed to be a tool for model development: data pre-processing, build model, train, validate, infer, save or load a model. -
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FusionCatcher
Somatic fusion-genes finder for RNA-seq data
FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples. The aims of FusionCatcher are: - very good detection rate for finding candidate fusion genes, - very easy to use (i.e. no a priori knowledge of databases and bioinformatics is needed in order to run FusionCatcher), - very good detection of challenging fusion genes, like for example IGH fusions, CIC fusions, DUX4 fusions, CRLF2 fusions, TCF3 fusions, etc... -
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AdaNet
Fast and flexible AutoML with learning guarantees
AdaNet is a TensorFlow framework for fast and flexible AutoML with learning guarantees. AdaNet is a lightweight TensorFlow-based framework for automatically learning high-quality models with minimal expert intervention. AdaNet builds on recent AutoML efforts to be fast and flexible while providing learning guarantees. Importantly, AdaNet provides a general framework for not only learning a neural network architecture but also for learning to the ensemble to obtain even better models. At each... -
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Microarray assosiated motif analyzer
Cis-element prediction tool from microarray data
We developed a novel clustering-free method, microarray-associated motif analyzer (MAMA), to predict novel cis-acting elements based on weighted sequence similarities and gene expression profiles in microarray analyses. Simulation of gene expression was performed using a support vector machine and based on the presence of predicted motifs and motif pairs. -
12
unrpa
A program to extract files from the RPA archive format
unrpa is a tool to extract files from the RPA archive format (from the Ren'Py Visual Novel Engine). It can also be used as a library. The best way to install unrpa is through your package manager, if a package is available for your operating system. I maintain an AUR package for Arch Linux users. -
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bristoSOFT Contacts
bristoSOFT Contacts is group oriented contact management software.
...All contacts include email, telephone, address, title, name, company and also include notes, files, integrated google maps, activities such as phone calls, appointments, messaging, calendar. Contacts is a novel project with cutting edge technology. -
14
DACO-algorithm
A novel transcription factor complex prediction algorithm.
...Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines protein-protein interaction networks and domain-domain interaction networks with the cluster-quality metric cohesiveness. The metric is locally maximized on the holistic level of protein interactions while sophisticated connectivity constraints on the domain level are utilized to account for the exclusive and thus inherently combinatorial nature of the interactions within such assemblies. ... -
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PPLine
SNP calling, annotation and gene/transcripts expression quantification
PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of the results -
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IPS Framework
A simple Python framework for loosely-coupled multiphysics simulations
...However, the design is quite general, and is suitable for many scientific and engineering domains. In addition to plasma physics, it is also being used in the engineering of batteries. One of the novel features of the IPS framework is its ability to support parallelism at multiple levels: components can launch individual parallel tasks, and also launch multiple tasks concurrently. The framework can execute multiple components concurrently, and even multiple simulations, all within the same pool of compute nodes. -
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Chronological Cohesive Units
The experimental source code for the paper
The experimental source code for the paper, "A Novel Recommendation Approach Based on Chronological Cohesive Units in Content Consuming" -
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SnowyOwl
RNA-Seq based gene prediction pipeline for fungal genomes
...Sensitivity is gained by repeatedly running the HMM gene predictor Augustus with varied input parameters, and selectivity by choosing the models with best homology to known proteins and best agreement to the RNA-Seq data. SnowyOwl has successfully predicted genes in 26 novel fungal genomes. The pipeline can be installed locally for high throughput and control over configuration. It can also be run on a remote server through a convenient web interface for occasional use. -
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...Visit http://www.biomedcentral.com/1471-2164/15/858/abstract for the pdf article describing the utility of iMSAT and if you use the program please cite this article as: Andersen and Mills: iMSAT: a novel approach to the development of microsatellite loci using barcoded Illumina libraries. BMC Genomics 2014 15:858.
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...Python implementation is more versatile (2D and 3D data). * a Leica file reader, * Steindhard bond orientational order calculation * a VTK file writer 1. Leocmach, M. & Tanaka, H. A novel particle tracking method with individual particle size measurement and its application to ordering in glassy hard sphere colloids. Soft Matter 9, 1447–1457 (2013). https://dx.doi.org/10.1039/C2SM27107A (http://arxiv.org/pdf/1301.7237.pdf)
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Phobos Application
Software for recording rodents' behavior during behavioral tests
...All extracted files can be readily combined to one in order for statistical analyses to be performed. If you use Phobos for your research, please cite: Telonis AG, Margarity M.Phobos: a novel software for recording rodents' behavior during the thigmotaxis and the elevated plus-maze test. Neurosci Lett (2015) doi: 10.1016/j.neulet.2015.05.045 Paper link: http://www.sciencedirect.com/science/article/pii/S0304394015004103 For support, questions or feedback: atelonis@users.sourceforge.net -
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
...The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs. -
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Tarots
A Ren'Py novel
A Ren'Py kinetic novel about fate, secrets to be told and the difficulty to share with with others and be who you really are. Réalisé avec le moteur Ren'Py, un récit interactif sur le destin, les secrets et la difficulté à les partager, ainsi que la difficulté a assumer qui on est vraiment -
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...It optimizes the visibility as well as enhances your content with several adttional features that raises the quality of your materials. It allows you to import and export content easily, as well as supports novel ways of reusing content in learning environments.
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ARDEN
Specificity Control for Read Alignments Using an Artificial Reference
We introduce ARDEN (Artificial Reference Driven Estimation of false positives in NGS data), a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation.
