Search Results for "gnu science" - Page 22
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Showing 1337 open source projects for "gnu science"
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eemod_dnsmod
A detailed nitrogen model inside of a simple ecological model
This is an simple ecological model for lakes and reservoirs that contains a very detailed description of the most relevant nitrogen processes. The model is not very complete, but the main intention is to develop a library to be coupled with other models and use the full-mixed model as a testing version. A lot of things can be improved. I will read all the suggestions but I cannot promise that I will include all of them. Every new part of the code will contain the name of the author. If... -
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ReadWrapper is a Python toolset to prepare and package raw sequencing data ("reads") for submission to the Sequence Read Archive (SRA, http://trace.ncbi.nlm.nih.gov/Traces/sra/).
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The sigrok project aims at creating a portable, cross-platform, Free/Libre/Open-Source signal analysis software suite that supports various device types, such as logic analyzers, MSOs, oscilloscopes, multimeters, LCR meters, sound level meters, thermometers, anemometers, light meters, dataloggers, function generators, power supplies, GPIB interfaces, and more.
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SiMTraM
"SiMTraM" Simulation of Mixed Traffic Mobility
"SiMTraM" Simulation of Mixed Traffic Mobility is an extension of SUMO (A Traffic Simulator Developed by DLR, Germany) for Heterogeneous traffic. This software is developed by Transportation Lab, IIT Bombay. SiMTraM supports the heterogeneous traffic behaviour often found at developing countries such as India, China and in most of the part of Asia and Middle East continent. SiMTraM also supports the homogeneous traffic found at other part of the world. -
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Black Spot Leaf Area Calculator
Automated leaf area estimation from scanned leaf images
Black Spot is a free stand alone software and method to estimate leaf area from images of leaves captured using standard flatbed scanners. This easy to use software allows the user to batch process a large number of samples from multiple species with minimal user input. -
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GS junior Webserver
GS junior Webserver
GS junior Webserver is a web based file server to easily access sequencing data of -
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Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no
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GarlicSim is an ambitious open-source project that attempts to redefine the way that people think about computer simulations, making a new standard for how simulations are used. It is not hosted on SourceForge; Visit http://garlicsim.org to get it.
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w3af, is a Web Application Attack and Audit Framework. The w3af core and it's plugins are fully written in python. The project has more than 130 plugins, which check for SQL injection, cross site scripting (xss), local and remote file inclusion and much more. This project has been migrated to github! See details in our project site: http://w3af.org/
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A set of very optimized tools for indexing/querying huge genomes/files. Provided so far: a very fast exact mapper, and an unconstrained split-mapper
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PyMbs has moved to Bitbucket: https://bitbucket.org/pymbs/pymbs PyMbs is a Python library for modelling holonomic multibody systems. It is able to generate simulation code for Python, Modelica and Matlab.
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Cyberbit
Visual Cryptography and Bit-Plane Complexity Segmentation in Python
Hide secret messages in your pictures! Cyberbit lets you transmit a secret message to an intended person in a new manner. The secret message is an 1-bit deep black & white image. The message can contain written text, a drawing, a secret code etc. Using Visual Cryptography the application splits the secret message into two "shadow images" called <<shares>>. Any of the two shares will be embedded into a "normal" image file called by tradition <<vessel>>. You can use a method of hand to... -
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pyTRAX
ODEs solver with GUI
This small program named TRAX is capable of solving systems of ordinary differential equations and plotting the solution on a phase plane as well as function of time. The program is intended for educational purposes. The program runs on any Python-enabled platform, including GNU/Linux and MS\Windows OSs. To run the program you will need a python interpreter ver. 2.x and compatible versions of numpy, scipy and matplotlib libraries. See screenshot for usage reference. -
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dAnalytics
dAnalytics is a software made for education in discriminant analysis.
dAnalytics is a software made for educational purposes to work with discriminant analysis. It's a very simple calculator over bi-dimensional populations. You input a file with two columns (one for each variable) and tryout different separations of populations (blue and red) and analyze it's efficiency by observing the eigen value result for the attempted separation. It also gives many information about the statistics both of the input and the separated populations. There's a documentation... -
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steganoroute
Send steganographed text messages to mtr with fake hops in the network
Steganoroute is a tool to send steganographed text messages to another computer over the network. The receiver must make a traceroute to the sender using the mtr program (and pressing 'd' once to switch the display mode to the continuous graph). This tool, the sender, creates several fake hops and makes them answer the ICMP packets (or not) to write the letters one by one on the mtr client screen. -
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BRAHMS is a Modular Execution Framework for dynamical systems. It knits together independently-authored software modules implementing dynamical processes into an integrated system, and supervises the deployment and execution of that system.
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Moved to https://github.com/rdiankov/openrave An open-source, cross-platform, plugin-based robot planning environment for autonomous robotics. Includes services like collision detection, physics, (inverse) kinematics, sensors, robot controls, python bindings, and a network scripting environment.
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IMPORTANT: The project moved over to github! You can find it at: https://github.com/exhuma/python-cluster
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The igraph library
Library for creating and manipulating graphs
This is a library for creating and manipulating graphs with focus on speedy operations for large, sparse graphs. -
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Application to create 'electronic fluorescent pictographic' representations of gene expression patterns. Created at the Provart lab of the department of Cell & Systems Biology, University of Toronto.
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GEPETTO - Gene Prioritization in Java
GEPETTO (GEne Prioritization ExTended TOol)
GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein... -
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Ablator
A tool for automating laser ablations for neuroscience
Ablator is a suite of software that automates the microscopic detection of cell targets and also directs a 2-photon microscope to lesion these targets in arbitrary patterns for neuroscience research. See Hayes et al 2012 for an example of its usage (http://www.pnas.org/content/109/21/8286.abstract). -
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WTMParse
Python script to parse Unix-like WTMP files
Python script that was originally intended for use in forensic examinations that parses WTMP files from Unix-like operating systems and generates a CSS-styled HTML report containing login terminal, username, log start date and login time/date in a table. Good for postmortem forensic examinations or as a way of getting "last" like information where you don't have the ability to boot the machine in question but can grab the wtmp. -
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EduLB
The educational lattice Boltzmann code
EduLB is a small and easy to handle lattice Boltzmann code for channel flow. Main objective is to give interested people the opportunity to play around and see how things work. For feedback, leave a review, leave a comment on the discussion page or send me a private mail.