Search Results for "regular expression tool" - Page 2
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Showing 77 open source projects for "regular expression tool"
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Dynamite Download Manager
PyIDM remake for downloading stuff
...DDM supports a wide variety of file formats, enabling you to download general files, software, documents, and much more with ease. Additionally, it allows you to download videos from platforms like YouTube and Vimeo, as well as from tons of other streaming websites, making it a go-to tool for both regular and media-centric downloads. Its intuitive interface and robust features make it an essential tool for anyone looking to speed up their internet downloads while managing files effortlessly. -
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CompareDir
Tool to Compare 2 directories and handle the files.
Did you ever copy many files to a portable usb-harddisk and use another system to update or delete files ? And later have trouble to find the few files you changed among all the others ? CompareDir does just that: it can compare 2 directories + subdirectories and you decide what files you want to keep, copy or delete. Manual: point it at a MasterDir, a SlaveDir than click "Diff" = show only the files that are available in only 1 directory-tree. Or click "All" = show all files in both... -
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Screen Tracker is an open-source application that captures screenshots at regular intervals, stores them in organized folders, and provides a user-friendly interface for managing and viewing them. This tool is ideal for monitoring screen activity or creating a visual log of your work.
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databooks
A CLI tool to reduce the friction between data scientists
databooks is a package to ease the collaboration between data scientists using Jupyter notebooks, by reducing the number of git conflicts between different notebooks and resolution of git conflicts when encountered. Simply specify the paths for notebook files to remove metadata. By doing so, we can already avoid many of the conflicts. Specify the paths for notebook files with conflicts to be fixed. Then, databooks finds the source notebooks that caused the conflicts and compares them (so no... -
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h8mail
Email OSINT tool for finding breached credentials by email
h8mail is an open source email OSINT and password breach hunting tool designed to help security professionals investigate compromised credentials associated with email addresses. It works by querying multiple breach and reconnaissance services to identify whether an email address has appeared in publicly leaked datasets. The tool can also search locally stored breach dumps, such as Troy Hunt’s “Collection1” or the widely known “Breach Compilation,” allowing investigators to analyze large... -
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Deep Daze
Simple command line tool for text to image generation
...We can also feed in an image as an optimization goal, instead of only priming the generator network. Deepdaze will then render its own interpretation of that image. The regular mode for texts only allows 77 tokens. If you want to visualize a full story/paragraph/song/poem, set create_story to True. -
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RegexAssistant
Regex Windows GUI app to help learn, create,& test Regular Expressions
RegexAssistant is a Regex GUI application to help learn, create, and test Regular Expressions. It's an open source stand alone Windows application. RegexAssistant is great for beginners and intermediate-advanced regex users. -It helps beginners to learn regex by providing examples and token cheat-sheet. -Intermediate-advanced users can use RegexAssistant to test complex expressions. -
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Microarray assosiated motif analyzer
Cis-element prediction tool from microarray data
We developed a novel clustering-free method, microarray-associated motif analyzer (MAMA), to predict novel cis-acting elements based on weighted sequence similarities and gene expression profiles in microarray analyses. Simulation of gene expression was performed using a support vector machine and based on the presence of predicted motifs and motif pairs. The accuracy of simulated gene expression was used to evaluate the quality of prediction and to optimize the parameters used in this... -
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DEBay
Deconvolutes qPCR data to estimate cell-type-specific gene expression
...The user manual of DEBay: https://sourceforge.net/projects/debay/files/UserManual.pdf Sample data: https://sourceforge.net/projects/debay/files/Test_data/ Citation Information: Vimalathithan Devaraj, Biplab Bose. DEBay: A computational tool for deconvolution of quantitative PCR data for estimation of cell type-specific gene expression in a mixed population. Heliyon, 2020, 6(7), e04489. https://doi.org/10.1016/j.heliyon.2020.e04489 -
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Miasm
Reverse engineering framework in Python
The Miasm intermediate representation is used for multiple task: emulation through its jitter engine, symbolic execution, DSE, program analysis, but the intermediate representation can be a bit hard to read. We will present in this article new tricks Miasm has learned in 2018. Among them, the SSA/Out-of-SSA transformation, expression propagation and high-level operators can be joined to “lift” Miasm IR to a more human-readable language. We use graphviz to illustrate some graphs. Its layout does not always totally conform with a reverse engineering “ideal view”, so please be tolerant of those odd graphs. Miasm is not the first tool to implement this feature. ... -
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pyFileSearcher
simple searching tool for big fileservers
pyFileSearcher was designed to be lightweight, easy to use, but capable of handling a large volume of files tool. A tool that I personally could use on large corporate servers to find out - which files have taken all my space in the last few days? It's free, it's opensource, it's for linux and windows. The program is written in Python 3 using the Qt5. -
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The Deep Review
A collaboratively written review paper on deep learning, genomics, etc
This repository is home to the Deep Review, a review article on deep learning in precision medicine. The Deep Review is collaboratively written on GitHub using a tool called Manubot (see below). The project operates on an open contribution model, welcoming contributions from anyone. To see what's incoming, check the open pull requests. For project discussion and planning see the Issues. As of writing, we are aiming to publish an update of the deep review. We will continue to make project... -
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Acoustic Research Tool (ART)
Acoustic Simulation Library for Frequency and Time Domain Simulations.
ART is a flexible simulation framework for wind instruments. It includes a growing library of modelling elements. So far bore discontinuities, branches, tone holes, cylindrical and conical tubes, Bessel horns and bent tubes are available for frequency domain modelling. In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX... -
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MethyMer
Design of specific primer combinations for bisulfite sequencing
...It also incorporates TCGA CpG methylation (microarrays) and gene expression (RNA-Seq) data, as well as methylation-expression correlation analysis results for 20 human cancer types. ENCODE genome regions annotation data are also integrated in MethyMer -
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neovim-remote
This package provides an executable called nvr
neovim-remote is a command-line tool that lets users control existing Neovim processes from the shell. It provides an executable called nvr, which supports remote file opening, command execution, key sending, and expression evaluation. The tool solves a common terminal workflow problem by opening files inside an already running Neovim session instead of starting nested editor instances. -
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CorNetMap
A tool for Gene Expression Correlation Network
Capabilities of CorNetMap: 1. Read data as tab-delimited text file. Can be used for analysis of any data set beyond gene expression. 2. Capable of both two-dimensional and multidimensional data analysis. 3. Calculate Pearson correlation and cross-correlation for analysis data with phase difference. 4. Generate correlation Heat-map and draws network map. 5. Save correlation data as text file. How to use and doccumentation:... -
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Logicheck
An interactive tool to test logical structures and expressions
This program is intended to be useful for testing Boolean logic or propositional logic. It sets out logical expressions with symbols such as "AND" and "OR" in a graphical user interface. A truth table can then be generated for any such set of expressions. It can also be used to test the validity of deductive arguments - the program will advise whether an argument is valid and if not, list the counter examples to the argument. -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,... -
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PyLogAnalyser
A Python multiplatform tool to filter, colorise and analyse logs
PyLogAnalyzer is a tool that receives an input log in black and white, a configuration INI file, which contains the list of rules to process the input, and an output file where to save the results. These rules permit to detect an input line according to a regular expression (regex) or line number range, filter it, pass it, colorise in foreground and background, columnise the groups of the regex and enable or disable the rule. -
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pipasic
pipasic: Protein Abundance Correction in Metaproteomic Data
...However, difficulties arise due to the high sequence similarity between related organisms. Further, the state of conservation of proteins between species can be correlated with their expression level which can lead to significant bias in results and interpretation. These challenges are similar but not identical to the challenges arising in the analysis of metagenomic samples and require specific solutions. pipasic (peptide intensity-weighted proteome abundance similarity correction) is a tool which corrects identification and spectral counting based quantification results using peptide similarity estimation and expression level weighting within a non-negative lasso framework. pipasic has distinct advantages over approaches only regarding unique peptides or aggregating results to the lowest common ancestor. -
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A cross platform file and folder mass renamer, allows many different renaming operations in a GUI. Please note that development has moved to GitHub: https://github.com/metamorphose
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AutoTeach
AutoTeach makes kids study and learn in exchange for internet access.
AutoTeach is a tool that enables parents to supplement The AutoTeach Parent Tool enables parents to supplement their childrens' education without supervision or drama. With AutoTeach you can queue-up activities and tasks that will be dutifully performed at regular intervals. Why will they cooperate like this? Because AutoTeach meters their internet access by using credits which they earn by performing the agenda which you have queued-up for them. -
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TextTools is a freeware corpus linguistics tool developed in Python to aid in research. This program analyzes user-created corpora and displays information about word (token) frequency, n-grams, clusters, collocations, keyword in context (KWIC), and keyness. TextTools is designed to be user-friendly and intuitive and will run natively on Mac OS X.
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Notepad++ Python Script
A Python Scripting plugin for Notepad++
A Python Scripting plugin for Notepad++. Complete easy script access to all of the editor's features (including absolutely everything in Scintilla). Configurable menus and toolbar options, assign shortcuts to scripts. -
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etm provides an intuitive format for using plain text files to store data, a command line interface for viewing data in a variety of convenient ways and a GUI interface for both viewing and modifying data. Repetition and alerts are supported .
