Search Results for "j-trace" - Page 2
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Showing 76 open source projects for "j-trace"
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OpenFlamingo
An open-source framework for training large multimodal models
...We provide an initial OpenFlamingo 9B model using a CLIP ViT-Large vision encoder and a LLaMA-7B language model. In general, we support any CLIP vision encoder. For the language model, we support LLaMA, OPT, GPT-Neo, GPT-J, and Pythia models. OpenFlamingo is a multimodal language model that can be used for a variety of tasks. It is trained on a large multimodal dataset. -
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Reinforcement Learning Methods
Simple Reinforcement learning tutorials
...It provides clear code examples for foundational techniques like Q-learning, policy gradients, deep Q-networks, actor-critic methods, and value function approximation within familiar simulation environments. Each algorithm is structured with readable code, explanatory comments, and corresponding environment interaction loops so learners can easily trace how actions, rewards, and model updates connect. The project also includes demo scripts that visualize learning curves and allow students to observe policy improvement over training iterations. By using TensorFlow as the backbone, it highlights practical considerations such as tensor shapes, loss computation, optimization steps, and batching in an RL context. -
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AI Atelier
Based on the Disco Diffusion, version of the AI art creation software
Based on the Disco Diffusion, we have developed a Chinese & English version of the AI art creation software "AI Atelier". We offer both Text-To-Image models (Disco Diffusion and VQGAN+CLIP) and Text-To-Text (GPT-J-6B and GPT-NEOX-20B) as options. Making available complete source code of licensed works and modifications, which include larger works using a licensed work, under the same license. Copyright and license notices must be preserved. When a modified version is used to provide a service over a network, the complete source code of the modified version must be made available. ... -
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gpt-j-api
API for the GPT-J language mode. Including a FastAPI backend
An API to interact with the GPT-J language model and variants! You can use and test the model in two different ways. These are the endpoints of the public API and require no authentication. Just SSH into a TPU VM. This code was tested on both the v2-8 and v3-8 variants. -
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HistogramsApp
Application that generates KDE-PDP plots from geochronological data
...To cite the application please refer to: 1) https://www.tandfonline.com/doi/abs/10.1080/00206814.2021.1954556?journalCode=tigr20 Rodriguez-Corcho, A. F., Rojas-Agramonte, Y., Barrera-Gonzalez, J. A., Marroquin-Gomez, M. P., Bonilla-Correa, S., Izquierdo-Camacho, D., ... & Montes, C. (2021). The Colombian geochronological database (CGD). International Geology Review, 1-35. And the Zenodo repository where the source code is available: 2) Rodriguez Corcho (2021). andresrcorcho/CGD_HistogramsApp: HistogramsApp_1.5 (1.5). ... -
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JSONVisor
Visor for mass spectrometry JSON files generated by Integrator
...For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/jsonvisor3/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124 -
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pycassonne
Carcassonne clone written in python using pygame
...You may play against one or more computer/human players using this game with different selectable computer players' skills. Computer player examines own her step only, so the analysation depth is only 1, trying to gain the maximum available extra points. Turning trace mode on it is possible to play against computer with ultra skill level, where the analysation depth is increased to 2. With this setting the AI is stronger but the gameplay is unbearable slow. It is just for test purpose. -
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LymPHOS2
LymPHOS2 Web-App
LymPHOS2 is a web-based Application at www.LymPHOS.org containing peptidic and protein sequences and spectrometric information on the PhosphoProteome of human T-Lymphocytes. - Nguyen, TD., Vidal-Cortes, O., Gallardo, Ó., Abian, J., Carrascal, M., LymPHOS 2.0: an update of a phosphosite database of primary human T cells. Database 2015, 2015. DOI: 10.1093/database/bav115 - Carrascal, M., Ovelleiro, D., Casas, V., Gay, M., Abian, J., Phosphorylation analysis of primary human T lymphocytes using sequential IMAC and titanium oxide enrichment. J. Proteome Res. 2008, 7, 5167-5176. ... -
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EasierMGF
Converts RAW Thermo Files into MGF files
...For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/easiermgf3/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124 -
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TCellXTalk
TCellXTalk Web-App from LP CSIC/UAB
...More detailed information on TCellXTalk and the people at the CSIC/UAB Proteomics Laboratory behind it can be obtained at https://www.tcellxtalk.org/about/ - Casanovas, A., Gallardo, Ó., Carrascal, M., Abian, J., TCellXTalk facilitates the detection of co-modified peptides for the study of protein post-translational modification cross-talk in T cells. Bioinformatics 2019, 35-8, 1404–1413, DOI 10.1093/bioinformatics/bty805 ( https://doi.org/10.1093/bioinformatics/bty805 ) -
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Dive-into-DL-TensorFlow2.0
Dive into Deep Learning
...Li Mu by the tutor of archersama , the implementation of this project has been agreed by Mr. Li Mu. Original authors: Aston Zhang, Li Mu, Zachary C. Lipton, Alexander J. Smola and other community contributors. There are some differences between the Chinese and English versions of this book . This project mainly focuses on TensorFlow2 reconstruction for the Chinese version of this book. In addition, this project also refers to the project Dive-into-DL-PyTorch , which refactored PyTorch in the Chinese version of this book, and I would like to express my gratitude here. ... -
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GTK replacement for Johnson J-Station J-Edit. The project has moved here: https://github.com/fengalin/gstation-edit Check this link for GTK-3 support and additional features.
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...With the basic library one can solve heat flow equations, Maxwell equations, and solid mechanical problems. Several add-ons are available for particular application classes. New paper: J. Schöberl: "C++11 Implementation of Finite Elements in NGSolve", ASC Report 30/2014, Institute for Analysis and Scientific Computing, Vienna University of Technology, 2014 http://www.asc.tuwien.ac.at/~schoeberl/wiki/publications/ngs-cpp11.pdf
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Algorithms in Python
Data Structures and Algorithms in Python
Algorithms in Python is a collection of algorithm and data structure implementations (primarily in Python) meant to serve as both learning material and reference code for engineers. It includes code for graph algorithms, heap data structures, stacks, queues, and more — each implemented cleanly so learners can trace logic and adapt for their problems. The repository is particularly useful for people preparing for competitive programming, job interviews, or building a foundational understanding of algorithmic patterns. Because it’s openly maintained, you can browse through issues, see test cases, and observe coding style in a “learning through code” fashion. ... -
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Leave A Trace Tools
Tools for reading the track data of the project "Leave a Trace"
The art project "Leave a Trace" (LAT) records an displays people movement in real time. It is installed as a permanent exhibition within the Charité in Berlin, Germany. Please find more Details about LAT here: https://leave-a-trace.charite.de/action This sourceforge project provides python tools to read the raw XML data produced by LAT. The data reading module works with python2 and python3. -
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SLEF
Subjective Logic Experimental Framework
Experiment developed for the paper Subjective Logic Operators in Trust Assessment: An Empirical Study by F. Cerutti, L. M. Kaplan, T. J. Norman, N. Oren, and A. Toniolo ISF Journal, 2014 -
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This project houses software to analyze data acquired from electrophysiology experiments. Currently, we have an Octave/MATLAB program to analyze electroneurogram traces of coupled oscillators, and a Perl library for the analysis of voltage trace data
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BayesRate
Bayesian estimation of diversification rates
BayesRate is a program to estimate speciation and extinction rates from dated phylogenies in a Bayesian framework. The methods are described in: Silvestro, D., Schnitzler, J. and Zizka, G. (2011) A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evolutionary Biology, 11, 311 Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution, 68, 163-175. -
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orbkit (Moved to Github)
A Modular Python Toolbox for Cross-Platform Post-Processing of Quantum
...If you use orbkit in your work, please cite it as follows: Gunter Hermann, Vincent Pohl, Jean Christophe Tremblay, Beate Paulus, Hans-Christian Hege, and Axel Schild, "ORBKIT: A Modular Python Toolbox for Cross-Platform Postprocessing of Quantum Chemical Wavefunction Data", J. Comput. Chem. 2016, DOI: 10.1002/jcc.24358. orbkit's documentation can be found at http://orbkit.github.io/ -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,... -
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Joint Strike Force
A prototype flight simulator with several dog-fighting scenarios.
...Game library combines some modules inspired by open source pygame projects: PyGGEL Robosim, GalaxyMage, 3D math tests, etc. left, right arrows: roll left/right up, down arrows: pitch up/down [ ]: yaw left,right j,k: yaw left,right + level out left click: shoots gun b: bomb m: missile +: increase throttle -: decrease throttle F1-F4: toggle individual panels F12: turn off panels + cockpit overlay Space: toggle forward/aft views Enter: take screenshot -
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gtkhst is a collection of GLib2 objects to compute statistics (mean, variance, correlations) in 1 and 2 dimensions and a set of Gtk2 widgets to display 1D and 2D histograms as well as trace plots showing the evolution with time of the monitored quantity
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PyRate
Bayesian Estimation of Speciation and Extinction from Fossil Data
PyRate is a Python program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework. The method was described by D Silvestro, J Schnitzler, LH Liow, A Antonelli, and N Salamin in Systematic Biology (http://sysbio.oxfordjournals.org/content/early/2014/02/08/sysbio.syu006.abstract). *Please download the most up-to-date code from the "PyRate code" tab on this page or from: https://github.com/dsilvestro/PyRate * *An updated manual can be found here: https://github.com/dsilvestro/PyRate/tree/master/tutorials * -
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LightProfiler
Profiler for Oracle extended SQL trace files
LightProfiler – application for performance analysis of the Oracle databases. It generates detailed resource profile for extended SQL trace files (10046 event), containing information about consuming of response time (by events, by cursors, etc.), data files usage, error analysis (SQL, PL/SQL) and much more. Also it contain tools for additional processing of trace files (extract session data, splitting files) and for management of database's sessions (disconnecting, tracing, monitor parameters, blocking locks, events and etc.) -
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irit_diff_sequences
Python tool to create lifespan sequences from Wikipedia edits history
...The tool is first developed for the Wikipedia edits history but can easily be adapted for others applications. From a database containing for each article its list of revisions, produce one csv file per article containing authored sequences and lifespans. Output format: i,j,lifespan,author with - i : begining of the chars sequence - j : end of the chars sequence - lifespan : number of edits the sequence has survives until the lattest revision - author : author id of the sequence.
