Search Results for "j-interop" - Page 2
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Showing 50 open source projects for "j-interop"
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BayesRate
Bayesian estimation of diversification rates
BayesRate is a program to estimate speciation and extinction rates from dated phylogenies in a Bayesian framework. The methods are described in: Silvestro, D., Schnitzler, J. and Zizka, G. (2011) A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evolutionary Biology, 11, 311 Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution, 68, 163-175. -
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orbkit (Moved to Github)
A Modular Python Toolbox for Cross-Platform Post-Processing of Quantum
...If you use orbkit in your work, please cite it as follows: Gunter Hermann, Vincent Pohl, Jean Christophe Tremblay, Beate Paulus, Hans-Christian Hege, and Axel Schild, "ORBKIT: A Modular Python Toolbox for Cross-Platform Postprocessing of Quantum Chemical Wavefunction Data", J. Comput. Chem. 2016, DOI: 10.1002/jcc.24358. orbkit's documentation can be found at http://orbkit.github.io/ -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,... -
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Joint Strike Force
A prototype flight simulator with several dog-fighting scenarios.
...Game library combines some modules inspired by open source pygame projects: PyGGEL Robosim, GalaxyMage, 3D math tests, etc. left, right arrows: roll left/right up, down arrows: pitch up/down [ ]: yaw left,right j,k: yaw left,right + level out left click: shoots gun b: bomb m: missile +: increase throttle -: decrease throttle F1-F4: toggle individual panels F12: turn off panels + cockpit overlay Space: toggle forward/aft views Enter: take screenshot -
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PyRate
Bayesian Estimation of Speciation and Extinction from Fossil Data
PyRate is a Python program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework. The method was described by D Silvestro, J Schnitzler, LH Liow, A Antonelli, and N Salamin in Systematic Biology (http://sysbio.oxfordjournals.org/content/early/2014/02/08/sysbio.syu006.abstract). *Please download the most up-to-date code from the "PyRate code" tab on this page or from: https://github.com/dsilvestro/PyRate * *An updated manual can be found here: https://github.com/dsilvestro/PyRate/tree/master/tutorials * -
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irit_diff_sequences
Python tool to create lifespan sequences from Wikipedia edits history
...The tool is first developed for the Wikipedia edits history but can easily be adapted for others applications. From a database containing for each article its list of revisions, produce one csv file per article containing authored sequences and lifespans. Output format: i,j,lifespan,author with - i : begining of the chars sequence - j : end of the chars sequence - lifespan : number of edits the sequence has survives until the lattest revision - author : author id of the sequence. -
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TuxWordSmith
TuxWordSmith uses XDXF dictionaries to play in 88 languages
Similar to the classic word game 'Scrabble', but with unicode support for multiple languages and character sets. The game is currently distributed with eighty-eight (88) dictionary resources for playing Language[i]-Language[j] 'Scrabble'. For example, if configured to use the French-English dictionary, then the distribution of available tiles will be computed based on frequency of occurance of each character of Language[i] (French), and for each submission the corresponding definition will be given in Language[j] (English). -
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PETRILab
Simulador de Redes de Petri Interpretadas para Controle
...Com uma interface gráfica simples e intuitiva, o usuário consegue modelar e simular passo-a-passo sua RPIC de forma rápida e prática, afim de estudá-la e aprimorá-la. Além disso, o software conta com uma conversão automática de RPICs em diagramas Ladder, como proposto no artigo de M. V. Moreira e J. C. Basílio [1]. Para utilizar o programa, baixe a versão mais recente em https://sourceforge.net/projects/petrilab/files/, extraia no local de preferência e execute o arquivo 'petrilab.pyw'. [1] M. V. Moreira e J. C. Basílio, “Bridging the Gap Between Design and Implementation of Discrete-Event Controllers”.IEEE TRANSACTIONS ON AUTOMATION SCIENCE AND ENGINEERIN -
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Islaki Defender
Missile Command-type game for Linux using Pygame
IMPORTANT: The cursor is used to aim, the primary firing buttions are 'J', 'K', and 'L'. There is no startup menu as of yet so the game just jumps right in. Islaki defender is a program I wrote a few years ago for python 2.7. I have tried updating for Python3, however pygame does not appear to be compatible just yet. This game is similar to Missile Command however it adds an extra dimension of variability. -
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Chi Square Calculator
An unlimited calculator for Chi Squared
...## Sorry for the lack of floating point (Decimal) numbers support; attempting to input decimals will crash the program. Will fix soon! If you need any help, information, my email is: max-j-anderson@hotmail.co.uk -
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RASPnmr
Protein NMR backbone resonance assignment
...Uniquely, RASP is capable of extensive assignments even in the abscence of Cbeta chemical shift information: over a test set of 154 proteins RASP assigns 88 % of residues with an accuracy of 99.7 %, using only information available from HNCO and HNCA spectra. RASP is described here: MacRaild and Norton (2014) RASP: Rapid and robust backbone chemical shift assignments from protein structure. J Biomol NMR doi:10.1007/s10858-014-9813-7 -
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ReferenceFree
Scripts for reference free genomic analysis
These are Python scripts plus C/C++ programs for automating the reference free genomic analysis described in: Kua C-S, Ruan J, Harting J, Ye C-X, Helmus MR, et al. (2012) Reference-Free Comparative Genomics of 174 Chloroplasts. PLoS One 7(11). http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0048995 Analytical concept conceived by CHCannon and CSKua. Original script written in Mathematica by CHCannon. -
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Golden Point
A simple, console-based card game, similar to some other card games.
...The main goal of the game is to get more points then your opponent, but in the same time not to get more than 21 ("Golden Point"). During the game you get cards, which have next values: 6, 7, 8, 9, 10 - according to numbers in it's names; J - 2 points; Q - 3 points; K - 4 points; A - 11 points. In the beginning of the game you get 2 cards, and if your total points are less than 21, you can take more cards or keep your current cards. Then is your opponent's turn. If player got 21 - this is called "Golden Point". If player got more than 21 - this is too much, he has lost. ... -
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Framework for making Windows applications that are one .exe file in AutoHotKey_L,C++,C#, VB.NET,Java,Groovy,Common Lisp,Nemerle,Ruby,Python,PHP,Lua,Tcl,Perl,Jint,S#,WSH VBScript,HTML/JavaScript/CSS,COM, PowerShell without compiling . For .NET 4.
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Ajax/php interface to mpd (media player daemon). Web backend is PHP; manager for known songs is cli Python; known songs are stored in MySQL; more info to follow later.
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A colorized interactive dotplot program designed for pair-wise comparisons of RNA & DNA. The original idea was from the mind of late Prof. William J. Dreyer of Caltech. The idea is to be able to see the "tapestry" of life, which comes alive with color.
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pyCoreMIDI - Mac OS X MIDI interface for the python programmers. This is refactored code from the turcanator main project by 2006 Michal J Wallace, BSD style license. It's more useful driver instead of pormidi because of performance is amazing.
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ThoughtFlow-Sys is a new computer neuropsychological test developed in Python to study the verbal expression of thought flow, using a modification of Jung´s Word-Association Test. © 2008 - UNIFESP / Rodrigo C. Vertulo / Prof. Dr. Carlos J. R. Campos
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A Python script to automate some of the daily activities offered at emailcash.com.au. Best run as a cron job. Depends on John J. Lee's ClientForm and ClientCookie from http://wwwsearch.sourceforge.net/
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pyRCX is an IRC chat server written in python by Christopher J. Webb and will run on any operating system with the python interpreter installed.
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J-Sim (previously known as JavaSim) is a component-based, compositional simulation environment written in Java. It is built upon the autonomous component architecture (ACA), a component architecture at the implementation level.
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...Simple commands allow DM to manage a game session and track characters and monsters statistics. It is written in Java (1.4.0 at least). Data is stored in XML and you can script it with j[p]ython.
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The Python Genetic Programming Project implements a Genetic Programming System a la J Koza in Python.
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pymzML
Python module to interface mzML data in Python
Python module to interface mzML data in Python based on cElementTree with additional tools for MS-informatics. CITATION Please cite us when using pymzML for your publications. Bald, T., Barth, J., Niehues, A., Specht, M., Hippler, M., & Fufezan, C. (2012). pymzML - Python module for high throughput bioinformatics on mass spectrometry data. Bioinformatics, 1-2. doi: 10.1093/bioinformatics/bts066