Search Results for "python structural engineering" - Page 19
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Showing 2696 open source projects for "python structural engineering"
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MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
MToolBox is a highly automated bioinformatics pipeline to reconstruct and analyze human mitochondrial DNA from high throughput sequencing data. MToolBox includes an updated computational strategy to assemble mitochondrial genomes from Whole Exome and/or Genome Sequencing (PMID: 22669646) and an improved fragment-classify tool (PMID:22139932) for haplogroup assignment, functional and prioritization analysis of mitochondrial variants. MToolBox provides pathogenicity scores, profiles of genome... -
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Peptide Vaccine Analysis Tool (PVAT) is an optimization software that predicts the best possible peptide stretches in a given protein sequence based on two factors: 1. the surface exposure of the peptide stretches, and 2. their susceptibility to mutation.
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CS-NPSA
Nonpolar Surface Area from Continuum Solvation
The Continuum Solvation Nonpolar Surface Area (CS-NPSA) package is a general purpose program suite for defining and computing nonpolar surface areas based on continuum solvation models. It is based on the classification of individual surface elements representing the solvent accessible surface used for the description of the polarized charge density elements in the CS models. -
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Python/FEniCS Examples
phase-field simulation and other examples with Python/FEniCS
The main goal of this project was developing phase-field simulations of lithium dendrite growth with FEniCS programmed in Python. The problem was based in the grand potential-based model of Zijian Hong and Venkatasubramanian Viswanathan (https://doi.org/10.1021/acsenergylett.8b01009) . Some simpler examples were developed before for a first approach with FEniCS: heat equation and combustion model. -
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3d Linear Transformation Visualization
Visualize 3d linear transformations.
A linear transformation is a function from one vector space to another that respects the linear structure of each vector space. For visualizing this we can transform a vector, but it has an obvious problem, because the linear transformation transform the whole space, not just the vector, in other words it transforms the basis vectors thus every vector in the space gets transformed too. That's why i created this app so everyone can see how a transformation matrix change the whole space. -
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FusionCatcher
Somatic fusion-genes finder for RNA-seq data
FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples. The aims of FusionCatcher are: - very good detection rate for finding candidate fusion genes, - very easy to use (i.e. no a priori knowledge of databases and bioinformatics is needed in order to run FusionCatcher), - very good detection of challenging fusion genes, like for example IGH... -
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Column Rebar Optimization
EC2/EC8 longitudial rebar optimization in concrete columns
For given set of external load combinations it checks section integrity (mode 1). Also it does rebar optimization (mode 2). -
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GeoSolver
A Python library for solving geometric constraint problems
GeoSolver is a Python library for solving geometric constraint problems. A graphical testing and demostration application, the Geometric Constraint Workbench is included with the software. -
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Lenia
Lenia - Mathematical Life Forms
Lenia is a 2D cellular automaton with continuous space, time, and states. It produces a huge variety of interesting life forms. There are various versions available. Python, Matlab, and web (JavaScript) versions are real-time, interactive, and equipped with statistics tools. Jupyter and R versions are non-interactive and just for demonstration purposes. -
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parent-map
Analyze parental contributions to evolved or engineered protein or DNA
Documentation: https://parent-map.readthedocs.io/ -
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Neural Networks Collection
Neural Networks Collection
This project implements in C++ a bunch of known Neural Networks. So far the project implements: LVQ in several variants, SOM in several variants, Hopfield network and Perceptron. Other neural network types are planned, but not implemented yet. The project can run in two modes: command line tool and Python 7.2 extension. Currently, Python version appears more functional, as it allows easy interaction with algorithms developed by other people. -
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Gato (Graph Animation Toolbox): Animate graph algorithms for example for computing shortest paths, minimal spanning trees, maximum flows or maximal cardinality or weight matchings. Create your own animations using the Animated Data Structures (ADS).
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medical image analysis
Libraries and command line tools for medical image processing.
This software provides libraries and command line tools for the processing and analysis of gray scale medical images. -
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PythonToolkit (PTK) is an interactive environment for python. It was designed to provide a python based environment similiar to Matlab for scientists and engineers however it can also be used as a general purpose interactive python environment.
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bioweb
polyglot language framework to analyze genetic data
polyglot framework using Python/C++/JavaScript to fast develop applications to analyze biological sequences -
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The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
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OpenFrames
Real-time interactive 3D graphics API for scientific simulations
OpenFrames has moved its primary development repository to GitHub! Everything else will follow. Get it at https://github.com/ravidavi/OpenFrames/wiki OpenFrames is an Application Programming Interface (API) that allows developers to provides the ability to add interactive 3D graphics to any scientific simulation. A simulation developer can use OpenFrames to specify what they want to visualize, without having to know any details of computer graphics programming. OpenFrames is currently... -
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OpenDAFF
Directional Audio File Format
OpenDAFF is a free, open-source software package for directional audio data - like the directivity of microphones, speakers, as well as head-related transfer functions (HRTFs) -
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SUM Calculator
Portable bundle for Windows
This is a PORTABLE app bundle for WINDOWS. No installation required! (Uncompressed size is about 60Mb because of required libraries for all Windows versions from XP to 10. The application is incomparably small.) Unzip, run sumcalc.exe. That's it! You can put the folder wherever you want, except system folders with permissions (e.g. Program Files), and create a shortcut if needed. Cross-platform source and... -
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ModbusPal - a Java MODBUS simulator
Modbus slave simulator
ModbusPal is a project to develop a PC-based Modbus simulator. Its goal is to reproduce a realistic environment, with many slaves and animated register values. Almost everything in ModbusPal can be customized and controlled by scripts. -
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Zipline
Zipline, a Pythonic algorithmic trading library
...Quantopian also offers a fully managed service for professionals that includes Zipline, Alphalens, Pyfolio, FactSet data, and more. Installing Zipline is slightly more involved than the average Python package. For a development installation (used to develop Zipline itself), create and activate a virtualenv, then run the etc/dev-install script. Please note that Zipline is not a community-led project. Zipline is maintained by the Quantopian engineering team, and we are quite small and often busy. -
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Metrix++
Management of source code quality is possible.
The project has been moved to https://github.com/metrixplusplus/metrixplusplus ______________________ Metrix++ is an extendable tool to collect and analyse code metrics. - Multiple languages supported - Multiple metrics available - Configurable. Every metric has got 'turn-on' and other configuration options. There are no predefined thresholds for metrics or rules. You can choose and configure any limit you want. - High-performance. Processes thousands of files per minutes. -... -
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AICtools
Workflow and set of tools for Automated Imagery Classification
AICtools is a GIS workflow and set of tools to facilitate Automated Imagery Classification (AIC) and analysis of surface features over time. Allows bulk processing of large data sets, including automated metadata processing/filtering, compressed archive extraction and file manipulation, raster band compositing, pre-processing, mosaicking, clipping. Automates a subset of operations involved in classification of satellite imagery and the associated raster calculations used for time trend analysis. -
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yabasta
Yet Another BAsic Scraper and Text Analysis
YA BASTA! is a Python/R application for Lyrics Web Scraper and Text Analysis. Web scraping is developed in Python, text analysis in R as Python subprocesses. YA BASTA! is only tested on windows OS. To run YA BASTA! just type on window command prompt: python.exe yabasta.py -
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GPlates
Interactive visualization of plate tectonics.
GPlates is a plate-tectonics program. Manipulate reconstructions of geological and paleo-geographic features through geological time. Interactively visualize vector, raster and volume data. PyGPlates is the GPlates Python library. Get fine-grained access to GPlates functionality in your Python scripts.
