Search Results for "structure" - Page 14
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Showing 494 open source projects for "structure"
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TI2BioP allows mainly the calculation of topological indices (spectral moments) derived from inferred and artificial 2D structures of DNA, RNA and proteins being possible to carry out a structure-function correlation irrespective of sequence alignments. TI2BioP version 3.0 is a python platform with a graphical interface designed for Windows, Linux and Mac OS.
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yapydata
Lower-Layer unified data - JSON, XML, YAML + INI, CFG, properties
The yapydata - Yet Another Python Data - provides a unified interface for the access to various data syntaxes. Therefore it encapsulates the libraries by offering a common API with the canonical internal data as JSON compatible Python in-memory structure. The application is foreseen in particular for the lower layer of the software stack including setup-tools. Thus it uses standard libraries only whenever possible. The initial supported DDLs are: * JSON, XML, YAML and the formats * INI, CFG, .properties The yapydata in particular supports the advanced access to data entries by mapping the dotted-OID notation onto mixed in-memory data types, optional including non-conformant tyeps such as tuple and set. -
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I3D models trained on Kinetics
Convolutional neural network model for video classification
Kinetics-I3D, developed by Google DeepMind, provides trained models and implementation code for the Inflated 3D ConvNet (I3D) architecture introduced in the paper “Quo Vadis, Action Recognition? A New Model and the Kinetics Dataset” (CVPR 2017). The I3D model extends the 2D convolutional structure of Inception-v1 into 3D, allowing it to capture spatial and temporal information from videos for action recognition. This repository includes pretrained I3D models on the Kinetics dataset, with both RGB and optical flow input streams. The models have achieved state-of-the-art results on benchmark datasets such as UCF101 and HMDB51, and also won first place in the CVPR 2017 Charades Challenge. ... -
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Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
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Build Securely on Azure with Proven FrameworksMoving to the cloud brings new challenges. How can you manage a larger attack surface while ensuring great network performance? Turn to Fortinet’s Tested Reference Architectures, blueprints for designing and securing cloud environments built by cybersecurity experts. Learn more and explore use cases in this white paper.
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LaueTools
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools -
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PyTorch pretrained BigGAN
PyTorch implementation of BigGAN with pretrained weights
...This reimplementation was done from the raw computation graph of the Tensorflow version and behave similarly to the TensorFlow version (variance of the output difference of the order of 1e-5). This implementation currently only contains the generator as the weights of the discriminator were not released (although the structure of the discriminator is very similar to the generator so it could be added pretty easily. -
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SSD
A PyTorch Implementation of Single Shot MultiBox Detector
...It supports commonly used benchmark datasets such as PASCAL VOC and MS COCO, and it also provides scripts to simplify downloading and setting up those datasets. For training visibility, the project includes support for Visdom so users can monitor loss in real time through a browser-based interface. Its structure makes it useful both as a reference implementation for learning SSD and as a base for custom experimentation in detection research or practical computer vision projects. -
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Pipelines
An experimental programming language for data flow
...Unlike other languages for defining data flow, the Pipeline language requires the implementation of components to be defined separately in the Python scripting language. This allows the details of implementations to be separated from the structure of the pipeline while providing access to thousands of active libraries for machine learning, data analysis, and processing. -
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django-dynamic-scraper
Creating Scrapy scrapers via the Django admin interface
...Since it simplifies things DDS is not usable for all kinds of scrapers, but it is well suited for the relatively common case of regularly scraping a website with a list of updated items (e.g. news, events, etc.) and then dig into the detail page to scrape some more infos for each item. Django Dynamic Scraper tries to keep its data structure in the database as separated as possible from the models in your app, so it comes with its own Django model classes for defining scrapers, runtime information related to your scraper runs and classes. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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data-science-ipython-notebooks
Data science Python notebooks: Deep learning
Data Science IPython Notebooks is a broad, curated set of Jupyter notebooks covering Python, data wrangling, visualization, machine learning, deep learning, and big data tools. It aims to be a practical map of the ecosystem, showing hands-on examples with libraries such as NumPy, pandas, matplotlib, scikit-learn, and others. Many notebooks introduce concepts step by step, then apply them to real datasets so readers can see techniques in action. Advanced sections touch on neural networks and... -
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Tacotron-2
DeepMind's Tacotron-2 Tensorflow implementation
Tacotron-2 is a TensorFlow implementation of DeepMind’s Tacotron-2 end-to-end text-to-speech architecture, which predicts mel spectrograms from raw text and then feeds them to a neural vocoder such as WaveNet. It reproduces the original paper’s hyperparameters exactly via paper_hparams.py, while also offering a tuned hparams.py with extra improvements that often yield better audio quality in practice. The repository is structured as a full training pipeline: dataset preparation,... -
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InfoGAN
Code for reproducing key results in the paper
...InfoGAN is a variant of the GAN (Generative Adversarial Network) architecture that aims to learn disentangled and interpretable latent representations by maximizing the mutual information between a subset of the latent codes and the generated outputs. That extra incentive encourages the generator to structure its latent space in a way where certain latent variables control meaningful, distinct factors (e.g. rotation, width, stroke thickness) in the output images. The repository includes code for experiments (e.g. on MNIST), launcher scripts, and some tests. It depends on a development version of TensorFlow (the code expects features not in older stable releases), and also uses other libraries like prettytensor and progressbar. -
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Virtual Laboratory Environment
A multi-modeling and simulation environment to study complex systems
VLE is a multi-modeling and simulation environment to study complex dynamic systems. VLE is based on the discrete event specification DEVS. and it implements the DSDE formalism (A merge of Dynamic Structure DEVS, DSDEVS, with Parallel DEVS, PDEVS). VLE provides a complete set of C++ libraries, called VFL (VLE Foundation Libraries), to develop DEVS models, to gets results of simulations, to launch simulation on cluster. The models can be developed with the DEVS formalism or with the classical mathematical formalism: Ordinary Differential Equation with Euler, Range-Kutta or QSS integrator, Finite state automaton (FDDEVS, UML State chart, Hybrid Petri net). ... -
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SG2Im
Code for "Image Generation from Scene Graphs", Johnson et al, CVPR 201
sg2im is a research codebase that learns to synthesize images from scene graphs—structured descriptions of objects and their relationships. Instead of conditioning on free-form text alone, it leverages graph structure to control layout and interactions, generating scenes that respect constraints like “person left of dog” or “cup on table.” The pipeline typically predicts object layouts (bounding boxes and masks) from the graph, then renders a realistic image conditioned on those layouts. This separation lets the model reason about geometry and composition before committing to texture and color, improving spatial fidelity. ... -
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ECS:Python
Light-weight C++ library for embedding Python into C++
...ECS:Python requires a Python distribution to be installed on your system. Python can be downloaded from: www.python.org/download What's new in v3.0: * Fixed x64 pointer types. * Added CI and unit tests. * Cleaned up project structure and code formatting. * Switch to C++11 std::mutex. -
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Data Algorithm/leetcode/lintcode
Data Structure and Algorithm notes
...Part I is a brief introduction of basic data structures and algorithms, such as, linked lists, stack, queues, trees, sorting and etc. This book notes about learning data structure and algorithms. It was written in Simplified Chinese but other languages such as English and Traditional Chinese are also working in progress. -
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CIF2Cell
Generating cells for electronic structure calculations from CIF files
CIF2Cell is a tool to generate the geometrical setup for various electronic structure codes from a CIF (Crystallographic Information Framework) file. The program currently supports output for a number of popular electronic structure programs, including ABINIT, ASE, CASTEP, CP2K, CPMD, CRYSTAL09, Elk, EMTO, Exciting, Fleur, FHI-aims, Hutsepot, MOPAC, Quantum Espresso, RSPt, Siesta, SPR-KKR, VASP. Also exports some related formats like .coo, .cfg and .xyz-files. -
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Generative Models
Collection of generative models, e.g. GAN, VAE in Pytorch
This project is a comprehensive open-source collection of implementations of various generative machine learning models designed to help researchers and developers experiment with deep generative techniques. The repository contains practical implementations of well-known architectures such as Generative Adversarial Networks (GANs), Variational Autoencoders (VAEs), Restricted Boltzmann Machines, and Helmholtz Machines, implemented primarily using modern deep learning frameworks like PyTorch... -
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PyQt5 Apps
Some useful apps based on PyQt5
PyQt5-Apps is a collection of desktop applications built using the PyQt5 framework, showcasing various graphical user interface implementations and utilities. The repository serves as a learning resource for developers interested in building cross-platform desktop applications with Python. It includes multiple small tools and demos that illustrate concepts such as window management, event handling, and UI design. The applications demonstrate how to integrate multimedia, file handling, and... -
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fooltrader
Quant framework for stock
Build a standard data schema, and then implement various connectors to import systems you are familiar with for analysis. fooltrader is a quantitative analysis trading system designed using big data technology, including data capture, cleaning, structuring, calculation, display, backtesting and trading. Its goal is to provide a unified framework for the whole market (stock, futures, bonds, foreign exchange, digital currency, macroeconomics, etc.) for research, backtesting, forecasting, and... -
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Awesome Math
This is the Curriculum for "How to Learn Mathematics Fast"
...The materials emphasize short, high-leverage resources—video lectures, concise notes, and hands-on exercises—that help you build momentum quickly. It also suggests checkpoints and practice ideas so you can test comprehension and move forward with confidence. The structure is useful both for newcomers who want a starting plan and for practitioners filling specific gaps before tackling ML or deep learning. Overall, it acts as a compact study plan that turns “learn math” from a vague goal into a concrete, achievable path. -
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Manifest Maker
Python app to create plain text manifest from files
Manifest Maker is a graphical Python application which takes a file or group of files and creates a plain text manifest list of each item. The manifest includes the file name (including directory structure) as well as a checksum of the file. (No longer maintained) -
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TensorFlow-ZH
Chinese version of the official document of TensorFlow
...It was initiated shortly after TensorFlow’s open-sourcing, with translation and proofreading contributions from a community of volunteers who aimed to bridge the language barrier for learners in China and other Mandarin communities. The repo mirrors the structure of the original English docs: chapters, sections, code examples, API references, and supplementary content like configuration and build guides. It includes additional files like a PDF version (compiled LaTeX/TeX sources), table of contents mappings, and translation metadata to track contributions. Over time, the repo has evolved to stay in sync with upstream changes, providing versioned snapshots of the translated content. -
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Deep Reinforcement Learning TensorFlow
TensorFlow implementation of Deep Reinforcement Learning papers
Deep Reinforcement Learning TensorFlow is a comprehensive TensorFlow codebase that implements several foundational deep reinforcement learning algorithms for educational and experimental use. The repository focuses on clarity and modularity so users can study how different RL approaches are built and compare their behavior across environments. It includes implementations of well-known algorithms such as Deep Q-Networks (DQN), policy gradients, and related variants, demonstrating how neural... -
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FastPhotoStyle
Style transfer, deep learning, feature transform
FastPhotoStyle is a deep learning-based image stylization framework designed to transfer the style of one photograph onto another while preserving photorealistic quality. Unlike traditional artistic style transfer methods that produce painterly outputs, this approach focuses on maintaining realistic textures, lighting, and spatial consistency. The method is based on a two-step process that includes a stylization phase followed by a smoothing operation, ensuring that the output image remains...
