Showing 486 open source projects for "algorithms"

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  • 1
    ChIP-RNA-seqPRO

    ChIP-RNA-seqPRO

    ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)

    ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,...
    Downloads: 0 This Week
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  • 2
    MultiPlink

    MultiPlink

    [UPDATE 28-10-2015] FINAL MULTIPLINK SSH LIFETIME v2.0 UP-5 "FAREWELL"

    Download Link Utama: http://sourceforge.net/projects/multiplink/files/Final_MultiPlink_SSHLIFETIME_2.0_UP-5_FAREWELL.rar/download Jika di Halaman Download, Link belum tersedia, klik link alternatif : https://www.dropbox.com/s/znptxp2gxhihpax/Final_MultiPlink_SSHLIFETIME_2.0_UP-5_FAREWELL.rar?dl=0 Lalu Download & Install juga Minor...
    Downloads: 2 This Week
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  • 3
    The General Hidden Markov Model Library (GHMM) is a C library with additional Python bindings implementing a wide range of types of Hidden Markov Models and algorithms: discrete, continous emissions, basic training, HMM clustering, HMM mixtures.
    Downloads: 5 This Week
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  • 4
    StochPy
    StochPy - Stochastistic modeling in Python - is an easy-to-use package, which provides several stochastic simulation algorithms and unique analysis techniques, which can be used for stochastic simulations of biochemical systems.
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    Downloads: 8 This Week
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  • 5
    iTag

    iTag

    Tag images using various categories and modifiers

    iTag has been designed for researchers that rely on photographic census techniques of animals that are hard to detect via image recognition algorithms and was originally developed for counting Grey Seals in the German wadden sea during March 2013. It has since then been further expanded and has now reached beta status. iTag allows Users to define up to 9 different categories and name them accordingly. In addition, 4 modifiers are available to further increase the options during a tagging session. ...
    Downloads: 2 This Week
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  • 6
    pycrc

    pycrc

    CRC C source generator

    pycrc is an easy to use CRC (cyclic redundancy check) calculator and C source code generator. The generated source code can be optimized for simplicity, speed or space. pycrc contains a long parameter list of common CRC models. The program is self contained and does not require installation. Apart from a python installation, it does not require other libraries to be installed.
    Downloads: 0 This Week
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  • 7
    Temperature Unit Converter

    Temperature Unit Converter

    Temperature Unit Converter

    ...(Or by visiting this page from your Android device) ---------------------------- A simple and useful GUI(Linux only) and command line program that lets you convert widely used temperature units to each other: Fahrenheit, Celsius and Kelvin. ------------------------------- Written by İ. Yuşa Çetin Using Python and gtk for GUI, C for algorithms and command line usage, Java for the Android version. ------------------------------------- This is still a Beta, so no one in the universe is responsible for anything happens :) I have it on my own computer and it's working properly. If you find any bugs feel free to tell me : yusha493@gmail.com --------------- If you are interested in translating the Android app to another language,current languages: *English *Turkish -Both by me :) ,please contact me: yusha493@gmail.com
    Downloads: 1 This Week
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  • 8

    Python Open Source Echosounder Toolkit

    real-time visualization of network data broadcasts from echosounders

    ...The Python Open Source Echosounder Toolkit (pyOSET) was designed to facilitate this process by providing near real-time visualization of network data broadcasts from multiple echosounder systems, and to serve as a framework for implementation of algorithms to detect, locate, and identify fish or the seabed. An Alpha release of the software is available under the GNU General Public License, version 2. Many practical aspects of the user interface are still in the planning and development phase. Those who wish to participate in the development of pyOSET are encouraged to subscribe to the Developer's Mailing List. ...
    Downloads: 0 This Week
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  • 9
    wordaxe (formerly deco-cow): A hyphenation library for Python. Several hyphenation algorithms: - the pattern-based from TeX/OOO, - by decomposition of compound words for German language. Includes support for paragraph line-breaking with ReportLab.
    Downloads: 1 This Week
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  • 10
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    ...Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated into Scipion and contains the algorithms in the core libraries and command line programs.
    Downloads: 0 This Week
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  • 11

    fitGCP

    Fitting genome coverage distributions with mixture models

    Genome coverage, the number of sequencing reads mapped to a position in a genome, is an insightful indicator of irregularities within sequencing experiments. While the average genome coverage is frequently used within algorithms in computational genomics, the complete information available in coverage profiles (i.e. histograms over all coverages) is currently not exploited to its full extent. Thus, biases such as fragmented or erroneous reference genomes often remain unaccounted for. Making this information accessible can improve the quality of sequencing experiments and quantitative analyses. ...
    Downloads: 0 This Week
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  • 12

    MITRE Common Layer 3

    Approach to choose MANET routing peers for existing protocols.

    ...In addition, our approach works as a pure interface between (any) MANET radio terminal and any IP router, so nodes using our interface interoperate with nodes that do not use this interface or with nodes using different algorithms to select routing peers. This software is a prototype of the Common Layer 3 interface for two different mobility patterns on a mobile network using OLSR for MANET routing and OSPFv2 for IP routing. Draft RFC describing this interface in detail may be found at https://datatracker.ietf.org/doc/draft-shaio-manet-common-l3-interface/.
    Downloads: 0 This Week
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  • 13
    ILNumerics.Net
    math lib for .NET. n-dim arrays, complex numbers, linear algebra, FFT, sorting, cells- and logical arrays as well as 3D plotting classes help developing algorithms on every platform supporting .NET. Sources from SVN, binaries: http://ilnumerics.net
    Downloads: 0 This Week
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  • 14
    C++, Matlab and Python library for Hidden-state Conditional Random Fields. Implements 3 algorithms: LDCRF, HCRF and CRF. For Windows and Linux, 32- and 64-bits. Optimized for multi-threading. Works with sparse or dense input features.
    Downloads: 8 This Week
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  • 15

    ant_farm

    Python-based reverse-engineering tool

    ant_farm provides a GUI framework for integrating all of those python tools you have written over the years to parse files, execute algorithms, display data etc.
    Downloads: 0 This Week
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  • 16
    mitoMaker

    mitoMaker

    mitoMaker - a mitochondria assembly and annotation script

    mitoMaker is a pipeline script developed to simplify the assembly and automatic annotation of mitochondrial genomes, based on raw NGS reads and an optional target reference. mitoMaker calls well known assemblers and algorithms, such as SOAPdenovo, MIRA and blast+ and parses their results providing easily readable outputs, such as FASTA, GENBANK, SEQUIN, PNG and others. General pipeline: 1-iterative De Novo assembly, with different k-mer values, trying to assemble a build that matches a target mitochondrial genome given. 2-searches for all mitochondrial gene features and circularization. 3-stores the best result found. 4-uses the best assembly as backbone for a reference based assembly, using MIRA and MITObim, trying to extend the mitogenome and close gaps. 5-annotates the best assembly, identifying the start and end position of each and every feature. 6-creates a folder with all the results (PNG, GENBANK, FASTA, SEQUIN, CAF, MAF and a stats logfile).
    Downloads: 1 This Week
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  • 17

    UnsupervisedPy

    unsupervised learning algorithms for python

    This is a library for python containing popular machine learning algorithms under the unsupervised learning framework. Algorithms implemented up to now: K-Means Intelligent K-Means Weighted K-Means Minkowski Weighted K-Means Intelligent Minkowski Weighted K-Means Partition Around Medoids (PAM) Build (initialization for PAM) Minkowski Weighted PAM (with and without Build) Ward Method
    Downloads: 0 This Week
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  • 18
    MRA

    MRA

    A general recommender system with basic models and MRA

    Multi-categorization Recommendation Adjusting (MRA) is to optimize the results of recommendation based on traditional(basic) recommendation models, through introducing objective category information and taking use of the feature that users always get the habits of preferring certain categories. Besides this, there are two advantages of this improved model: 1) it can be easily applied to any kind of existing recommendation models. And 2) a controller is set in this improved model to provide...
    Downloads: 0 This Week
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  • 19

    MarketSim

    A python based auction market simulator for agricultural trade

    The market assumes an environment in which farmers sell their produce through brokers and traders locate produce to buy through brokers. The major aim of the simulator is to experiment with various reputation mechanisms to manage bottlenecks and to model various adversarial scenarios. The market is aimed to simulate agricultural trade in developing countries. It is written in python and mysql database on Linux.
    Downloads: 0 This Week
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  • 20
    ImpraStorage

    ImpraStorage

    ImpraStorage provided a private imap access to store large files

    ImpraStorage provided a private imap access to store large files. Each file stored on the server is split in severals random parts. Each part also contains random noise data (lenght depends on a crypt key) to ensure privacy and exclude easy merge without the corresponding key. An index of files stored is encrypt (with the symmetric-key algorithm Kirmah) and regularly updated. Once decrypt, it permit to perform search on the server and download each part. transfert process is...
    Downloads: 0 This Week
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  • 21
    Kirmah
    Encryption with symmetric-key algorithm Kirmah - generate keys with exotic chars - redefine key length - key mark to ensure decryption capabilities - mix data - fast with multiprocessing - possible compression - gui on gtk3 - cli tool - python3 DEPENDENCIES : ======== python3, python-gobject, gobject-introspection, pygtk 3 modes are available to encrypt : ======== - compression (full / disabled or only final step) - random...
    Downloads: 0 This Week
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  • 22
    Travel Market Simulator
    That project aims at studying and comparing typical airline IT methods, for instance RM-related algorithms. It works from a Unix/Linux/Mac command-line, and exposes basic APIs. It is being developed in C++, with Python wrappers for some components.
    Downloads: 0 This Week
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  • 23

    PyVision Computer Vision Toolkit

    A Python computer vision library

    PyVision is a object-oriented Computer Vision Toolkit for researchers that contains vision and machine learning algorithms and algorithm analysis and easily interfaces with scipy/numpy, PIL, opencv and other computer and machine learning libraries.
    Downloads: 0 This Week
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  • 24
    SPADE

    SPADE

    A toolkit for developing and deploying protein structure algorithms.

    The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE.
    Downloads: 0 This Week
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  • 25
    A python module that provides algorithms for advanced search - basically all you need to build a search engine.
    Downloads: 0 This Week
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