Showing 33 open source projects for "workflow"

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    Authentic Theme

    Authentic Theme

    Official theme for the best server management panel

    Authentic Theme is a modern, responsive skin for the Webmin/Uberspace control panels that updates the look, feel, and usability of interface components. It replaces the default UI layout and navigation, adding sidebars, iconography, contextual menus, tabs, and dynamic theme options to enhance both aesthetics and workflow. The theme supports multiple screen sizes and devices, adapting elements like menus and panels to maintain usability on narrow windows. It also integrates customization options—color schemes, fonts, layout toggles—so administrators can brand and tailor the control panel. Under the hood it works with Webmin’s templating and module hooks to maintain compatibility with existing plugins and module content. ...
    Downloads: 0 This Week
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  • 2
    Gitolite

    Gitolite

    Hosting git repositories

    Gitolite is a lightweight Git server and access-control system that lets many human users share a single Unix account while enforcing fine-grained permissions. Configuration is “as code”: you manage users’ SSH keys and per-repo rules in a special admin repository, then push to apply changes instantly. Permissions are precise—read, write, or force-push can be allowed or denied per repository, branch, tag, or arbitrary ref patterns—so sensitive branches can be protected. Delegation features...
    Downloads: 0 This Week
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  • 3

    ArkiFuse - Arki's mod of "FUSE" emulator

    Builds of "FUSE" emulator with my own mods

    ArkiFuse is a free (GPL v2+) ZX Spectrum emulator based on FUSE Spectrum emulator (https://sourceforge.net/projects/fuse-emulator/). ArkiFuse contains some additional modifications and fixes, which have not been accepted or merged (yet) into the original FUSE project. See "Files" tab for download options of distribution files. Individual modifications/features can be tested with separately built distribution file(s) or .. - Nightly build of (Fuse) master, without mods - ...
    Downloads: 0 This Week
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  • 4
    Quiz/Survey/Test - QST

    Quiz/Survey/Test - QST

    A Free, complete, enterprise grade, open source exam management system

    QST, the worlds unparalleled open source online/lan assessment software. From a quick quiz on your phone to very large scale, high stakes, proctored desktop testing, we make it easy/secure/economical. Our intuitive design contains features (Immediate detailed results, Create/Export/Import/Convert Questions, WYSIWYG/Math-Chemistry/Basic Editors, Question/Item Bank, Multiple Question Types, Multiple Delivery Styles, Multiple Delivery/Results Options, Adaptive/Branching Questions, Randomly...
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    Downloads: 115 This Week
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  • 5
    LF Aligner helps translators create translation memories from texts and their translations. It relies on Hunalign for automatic sentence pairing. Input: txt, doc, docx, rtf, pdf, html. Output: tab delimited txt, TMX and xls. With web features. My email address is listed in readme.txt; for support, use the forum here. My personal website: www.farkastranslations.com.
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    Downloads: 150 This Week
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  • 6

    PINCIS

    PINCIS.pl is a Perl bioinf. script to analyze PICS data

    ...Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be concurrently used to generate cleavage specificity visualizations like the iceLogo (https://iomics.ugent.be/icelogoserver/create).
    Downloads: 1 This Week
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  • 7
    MMAP

    MMAP

    Multi-core Method for Analysis Pipelines

    For more information, please see home page.
    Downloads: 5 This Week
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  • 8
    TWiki Enterprise Collaboration Platform

    TWiki Enterprise Collaboration Platform

    Open Source Enterprise Wiki and Web Application Platform

    Enterprise collaboration platform with over 400 extensions. Users without programming skills can create web applications. 50,000 small businesses, many Fortune 500 companies, and millions of people use TWiki, with installations of 100,000s of pages. Visit http://twiki.org/ for the open source TWiki. The TWiki community is focusing on building the best collaboration platform for the workplace. We invite you to GET INVOLVED! More at http://bit.ly/twGetInv.
    Downloads: 13 This Week
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  • 9

    miARma-Seq

    a A suite designed to study mRNAs, miRNAs and circRNAs

    ...It is able to perform differential expression analysis, miRNA-mRNA target prediction and functional analysis among others. Most importantly, it can be applied to any sequenced organism, and it can be initiated at any step of the workflow. As a stand-alone tool, is both easy to install and extremely flexible in terms of its use. It brings together well-established software in a single bundle, allowing a complete analysis from raw data. All the capabilities can be easily and simultaneously enabled at will, regardless the step in the workflow.
    Downloads: 1 This Week
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  • 10
    SIMM

    SIMM

    SIMM: Simultaneous Identification of Multiple Mutations

    SIMM (Simultaneous Identification of Multiple Mutations) pipeline provides a workflow to align the clean reads to reference genome, call SNPs between mutants and reference genome, then genotype the SNPs and identify causal mutations from different mutants simultaneously without the sequencing information of wild-type progenitor. Individuals with mutant homozygous phenotype are bulked and sequenced to >20X, and then analyzed with SIMM to identify causal mutation(s) responsible for the mutant phenotype. ...
    Downloads: 0 This Week
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  • 11

    MOIRAI

    Simple Scientific Workflow System for CAGE Analysis

    ...After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. MOIRAI has a graphical interface allowing wet-lab researchers to create, modify and run analysis workflows. Embedded within the workflows are graphical quality control indicators allowing users assess data quality and to quickly spot potential problems. ...
    Downloads: 0 This Week
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  • 12
    Cress Tool Suite

    Cress Tool Suite

    Cress is a comprehensive toolset for graphical service/workflow design

    Cress (Communication Representation Employing Systematic Specification) allows graphical description of a wide variety of services such as in data communications/telecommunications, but Cress is not limited to this. The approach allows services to be described graphically as (work)flows of activities. Cress diagrams are automatically translated into formal languages for rigorous analysis and verification, and are also automatically translated into implementation languages for deployment...
    Downloads: 0 This Week
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  • 13

    iMir

    Integrated pipeline for HT miRNA-Seq data analysis

    Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs.
    Downloads: 0 This Week
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  • 14
    Simple, flexible system to implement and run workflows using Perl
    Downloads: 0 This Week
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  • 15
    Ergatis is a web-based utility used to create, run, and monitor reusable computational analysis pipelines, utilizing the Workflow engine. It contains pre-built components for common bioinformatics analysis tasks.
    Downloads: 0 This Week
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  • 16
    almtools

    almtools

    Collection of Open Source tools for HP ALM

    Collection of Open Source and free tools to be used for HP ALM administration, customization, and also end-user usage. This is a community effort. Feel free to use, share and contribute back!
    Downloads: 0 This Week
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  • 17

    U-SKIS - all versions

    Institutional Repository Workflow System

    University Scholarly Knowledge Inventory System (U-SKIS) was developed at the University of Utah. It tracks .pdf files, records communication, and stores publisher's archiving policies to determine what may be added to institutional repositories.
    Downloads: 0 This Week
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  • 18
    MyControl Workflow Server
    Der MyControl Workflow Server (WFS) ist ein deutschsprachiges, webbasiertes OpenSource Workflow Management System/BPM. Mehr Informationen, Support und CVS-Zugangsdaten: http://www.mycontrol.de/workflow/
    Downloads: 0 This Week
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  • 19
    ProPHAnE: Proteomics result Pruning and Homology group Annotation Engine A perl script based workflow for annotation of protein data coming from the 'Mascot' (Matrix Science) and 'Scaffold' (Proteome Software) pipeline. Coming soon: Prophane 2, "a much improved and extended version of Prophane based on HTML5, PHP and MySQL. Most importantly, the pipeline includes now functional predictions on profile Hidden Markov models (HMMs), is fully-automated, and can be controlled via a highly intuitive and user-friendly interface." ...
    Downloads: 0 This Week
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  • 20
    SWAMP is a flexible, java based workflow server that runs on top of tomcat. It reads its workflow definitions from XML files. Administration and tracking of workflow instances, execution of individual tasks can be done via the web and SOAP interfaces.
    Downloads: 0 This Week
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  • 21
    RESTful Perl ERP Framework
    RESTful Perl ERP Framework and Applications, 100% REST Architecture, RESTful Resource Elements, RESTful Workflow Resources, Server AND CLIENT Templating, Fully Customizable, Fully Integrate-able
    Downloads: 0 This Week
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  • 22
    ActionFolders are content-aware folders that allow you to orchestrate tasks based on file events. Whether you need automation, notification, workflow, or something more, ActionFolders are as flexible as your imagination.
    Downloads: 0 This Week
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  • 23
    Bricolage is a full-featured open source content management and publishing system. Its features include intuitive yet highly configurable administration, workflow, permissions, templating, server-neutral output, distribution, and document management.
    Downloads: 0 This Week
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  • 24
    Open Sourced version of the EverythingLinux.com.au warehouse back-end software. Includes website integration, purchasing, receipting, dispatch, production queues, BAS reporting, inventory and catalogue management, electronic paperless office.
    Downloads: 0 This Week
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  • 25
    Simple, fast to use complete workflow solution. Its main design goal is to be up and running in less than 1 hour.
    Downloads: 0 This Week
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