Search Results for "step/iges/brep"
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Showing 34 open source projects for "step/iges/brep"
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FullSSR
SSR detection and primer designing software
Traditional methods for isolation of microsatellites (SSRs) are often expensive and time consuming. Nowadays is easier and cheaper to obtain genomic data from next generation sequencing. Then, at least two software need to be applied in order to obtain SSR primers of SSR flanking sequences for PCR assays. Here we propose new software that allows the user to work with several sequences for PCR primer design in one step. -
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AstroCam is an C based daemon process for Linux and BSD to control stepmotors via SMC 800 cards. AstroCam also includes both, an PHP-based WebInterface and one based on Perl, for remote Stepengine control. You can control webcams with it.
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miARma-Seq
a A suite designed to study mRNAs, miRNAs and circRNAs
miARma-Seq, which stands for miRNA-Seq And RNA-Seq Multiprocess Analysis, is a suite designed to study mRNAs, miRNAs and circRNAs. It is able to perform differential expression analysis, miRNA-mRNA target prediction and functional analysis among others. Most importantly, it can be applied to any sequenced organism, and it can be initiated at any step of the workflow. As a stand-alone tool, is both easy to install and extremely flexible in terms of its use. It brings together well-established... -
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Flame Graphs
Stack trace visualizer
Flame graphs are a visualization of profiled software, allowing the most frequent code-paths to be identified quickly and accurately. They can be generated using my open source programs, which create interactive SVGs. See the Updates section for other implementations. Recently I've been helping with d3-flame-graph. The x-axis shows the stack profile population, sorted alphabetically (it is not the passage of time), and the y-axis shows stack depth, counting from zero at the bottom. Each... -
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OpenLdap Server Quick Setup
Tool to quickly set up an LDAP server
Tool to quickly set up an OpenLDAP server based on the steps outlined at: http://www.itzgeek.com/how-tos/linux/centos-how-tos/step-step-openldap-server-configuration-centos-7-rhel-7.html Automates the process of installing the required packages, generating a hashed password for the LDAP admin, creating certs, writing/importing config files, and restarting services. *This script will overwrite existing LDAP configs* Written with RHCSA students in mind, who will need an LDAP server... -
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Hamstr
A tool for directed ortholog search in ESTs and proteins
HaMStR has moved to https://github.com/bionf/hamstr where it is now part of the HaMStR-OneSeq package. HaMStR is a profile hidden Markov model based tool for a directed ortholog search in EST or protein sequence data. The program takes a pre-defined core group of orthologous sequences (core orthologs) and a set of sequences from a search taxon as input. HaMStR then combines in a two-step strategy a pHMM based search and a reverse search via BLAST to extend the core ortholog group with novel... -
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ISVASE
identification of sequence variant associated with splicing event
... with the existing software PVAAS, our method has several advantages such as stringent rule-depended filters and statistical filters in each step, detection sequence variants for known splicing events, identification sequence variants in two parts of splicing (junction) separately, detection junction shift events if providing known splicing annotation, evaluating splicing signal, comparing with known DNA mutation and/or RNA editing data, and short running time. -
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MITP
MITP - conserve & novel miRNA identification & target prediction tool
...). The program provide a step praramter (8 steps) which can allow running program from any step and finishing all remaining steps. You also can run step by step using each step program. Please run these step programs at the same directory for running main program MITP.pl. Some steps are optional (read filter, expression, miRNA class and target). When you select the related parameters belong to these optional steps, the program will run these steps. Otherwise, it skip these steps. -
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MGSyn
MGSyn - Automatic Synthesis for Industrial Automation
MGSyn (Model, Game, Synthesis) is an open-source tool which integrates game-based synthesis into model-driven development for industrial control and automation. It is served for research and educational purposes. MGSyn has been originally developed by Department of Informatics (Unit 6), TU München and fortiss GmbH and is now maintained by fortiss GmbH. The software is released under the GNU General Public License Version 3.0 (GPLv3). Please download the tutorial for step-by-step... -
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nagiosgraph parses output and performance data from Nagios plugins, stores the data in RRD files, and creates graphs and reports from the data. Graphs and reports can be embedded in Nagios. Easy to setup, highly customizable, and few dependencies.
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It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search.
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Stat cvs/svn Code Change
stat. cvs,svn code changes and generate html report
It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search. It's the mirror project of CodeChangeViewer: http://sourceforge.net/projects/ccv/. -
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular... -
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Pipeline Builder for NGS tools
Scripting tool for automatize and managing complex NGS analysis
.... It allows for data independent reproducible analysis creating protected environment which separates data from results through variable exportation. It comes as a command-line tool with a wizard menus and step-by-step tutorials. Pipeline Builder is written in Perl and it is crossplatform. -
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FIAP
Fully Integrated Annotation Pipeline
... users to annotate, for example, draft genome contigs or different genomes concatenated in multi-fasta file in a single step. FIAP works on all UNIX-like operating systems (tested on Ubuntu 14.04 LTS and Mac OS 10.9.4). -
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C-Lesh and SMW Engine
C-Lesh is a game programming language for 2D games.
.... As C-Lesh is somewhat primitive you may like it if you are into C. I'd say its a step up from C for 2D games. Everything is set - all you need is a sprite sheet and some programming knowledge. -
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A framework which uses xml-wizard-files to provide a step by step configuration procedure for linux or unix based program applications. Ein Framework, das XML-Wizard-Dateien nutzt, um daraus eine Schritt für Schritt Konfiguration für Linux bzw. Unix ba
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ASSD is a simple biological sample database focused on the storage of proteomics data. It tracks every processing step incl. results throughout a sample's lifetime. Next to proteomics data it can also store other results like FACS or Western Blots.
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Install Perl Module Script : Free Script to Install Perl modules to our system. This is an automated script developed in Perl to install Perl modules and all of its dependent modules with in a single step. Geo Varghese
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Grevis is a Linux graphical tool for learning and debugging the Perl regular expressions. It uses the output of the regular expression debugger (as of version 5.8.10) to obtain data needed to visualise the matching process step-by-step.
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Modified ssSNPer. Phenotype info for EBV-LCLs (HAPMAP CEU) for a minor histocompatibility antigen (mHag) specific T cell is input. Output is the region containing the mHag. A step-by-step read-me will be included.Email r.m.spaapen@umcutrecht.nl for help.
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A framework in support of Visible Ops step #3, to assist system administrators with creating automated, repeatable deployments of productions systems.
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Jubjub is a decision tree based framework for automating *NIX administrative processes and reacting to events. Working well with a network monitor such as Nagios, you can expose, document, and add notifications to scripts in one step.
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A Perl script that utilizes transcode, ffmpeg, mjpeg, and dvdauthor to convert a DivX movie to DVD compliant files (AUDIO_TS, VIDEO_TS). Pipes are used to combine the mpeg2 conversion, multiplexing, and dvdauthor'ing into one step.