Search Results for "malware-samples"
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Showing 31 open source projects for "malware-samples"
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Robolinux
Announcing Robolinux Cinnamon 14.1
Announcing The New Robolinux Series 14 Mate LTS - 2034 Robolinux is very pleased to announce a completely new 14.1 Mate privacy centered 1inux operating system you can download freely while also offering our users an optional 14+ advanced upgrade which comes with our Untracker and FAAST Boot along with one click popular privacy software installers like Tor and I2p, Wireshark and Bleachbit plus many more for a fair and reasonable price. Robolinux14.1-Mate is ideal for beginners and... -
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In addition to RPKM (Reads Per Kbp per Million reads) values, RACKJ computes read counts for exons and splicing events. In so doing, it is feasible to compare two samples and identify genes with most significant difference in exon(splicing)-level.
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Two tools able to edit your ipfilter.dat . These tools are able to edit your ipfilter.dat in order to check for big ranges and to check adjacent ranges . From the creators of ipfilterX , Nexus23 Labs . - Updates in Progress -
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misc genomics tools
Various scripts used in sequencing, annotation and RNAseq analysis
This is a collection of various programs developed in the course of a genomics project, involving the Pseudomonas strain NCIMB10586 These include * identifying and correcting errors in an (eg) pacbio genome sequence using illumina reads * prokaryotic sequence/genome annotation * RNAseq analysis - normalisation and collation of multiple samples as a group * RNAseq visualisation All scripts are provided on a 'best efforts' basis, however due to various system changes I do not guarantee that all files are the version used in the analysis. Also, please be aware that these were very much developed with expediency in mind - that is, the process was expected to be performed in its final form once; little care was given to optimising runtime or chaining scripts together, and sometimes external resources are accessed manually. -
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MetaErg
Metagenome Annotation Pipeline
MetaErg is a stand-alone and fully automated metagenome and metaproteome annotation pipeline published at: https://www.frontiersin.org/articles/10.3389/fgene.2019.00999/full. If you are using this pipeline for your work, please cite: Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999 The instructions on configuring and running the MetaErg pipeline is available at GitHub... -
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The Elvira project is a suite of tools to perform high-throughput genomic assemblies of repetitive, structured samples such as viruses or targeted regions of larger genomes.
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NOTE: The projects is now being developed here: https://github.com/eugmes/fntsample A program for making font samples that show Unicode coverage of the font and are similar in appearance to Unicode charts. Samples can be saved as PDF or PostScript files.
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datasw
datasw, a tool for rapid processing of HPLC-SAXS data.
...Sample monodispersity is key to reliable SAXS data interpretation and model building. Beamline setups with inline high-performance liquid chromatography (HPLC) are particularly useful for accurate profiling of heterogeneous samples. The program DATASW performs averaging of individual data frames from HPLC-SAXS experiment using a sliding window of a user-specified size, calculates overall parameters (I(0), Rg, Dmax and MW) and predicts the folding state (folded/unfolded) of the sample. Applications of DATASW are illustrated for several proteins with various oligomerization behaviors recorded at different beamlines. ... -
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
...Embedded within the workflows are graphical quality control indicators allowing users assess data quality and to quickly spot potential problems. MOIRAI package comes with three main workflows allowing users to map, annotate and perform an expression analysis over multiple samples. -
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REDO
REDO - RNA Editing Detection in Organelle
...The stringent rule depended filters and statistical filters are used in REDO for reducing false positive rate. It can provide detailed annotations, statistics and figures for RNA editing sites. REDO also can detect RNA editing events in multiple samples simultaneously and identify differential proportion of RNA editing events in different samples. Moreover, the genome variation can be easily removed by a subprogram fish.pl in our package. -
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Corbata
CORe microBiome Analysis Tools
Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples. -
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switchmap
Creates web pages that show information about Ethernet switches.
Switchmap is a Perl program that creates HTML pages that show information about a set of Ethernet switches. It uses SNMP to gather data from the switches. Samples of Switchmap output can be found on the Project home page. -
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PRIMUS
Pedigree Reconstruction and Identification of a Maximum Unrelated Set
NEW: Download new version with Pedigree Reconstruction at primus.gs.washington.edu This versions is outdated and incomplete. Please visit the new website for the complete version of PRIMUS. We present a method adapted from graph theory that always identifies the maximum set of unrelated individuals in any dataset, and allows weighting parameters to be utilized in unrelated sample selection. PRIMUS reads in user-generated IBD estimates and outputs the maximum possible set of unrelated... -
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vcfhacks
simple to use commandline programs for VCF filtering and manipulation
PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/vcfhacks) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/vcfhacks/releases/latest). (relatively) Simple to use commandline tools for the manipulation and analysis of VCF files, geared towards the identification of pathogenic mutations in Mendelian disease. -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade-defining polymorphism. This functionality has been implemented using the tabix tool on the server side, providing simple and rapid access to the information at each tree node, including informative SNPs stored in VCF-similar files. ... -
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WMI Lab
Explorer WMI classes, execute queries and generate scripts.
WMI Lab is a lightweight, open source application based on the .Net Framework 3.5 that expands on functions offered in common WMI tools to allow for the inspection, querying, deeper interrogation and code generation of WMI classes on local or remote Windows systems. -
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ClamTk is a graphical interface for Clam Antivirus. It is designed to be an easy-to-use, lightweight, on-demand desktop virus scanner for Linux.
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The system is designed to upload phishing emails to a database where they are automatically analyzed and customized reports can be generated. UnMask was developed by ECIT Labs, Dept of Computer Science, FSU. The director of the Lab is Dr. Sudhir Aggarwal. UnMask has substantial on-line help features and should mainly be self-explanatory.
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An integrated bioinformatics toolkit for analysis of ChIPseq data from the Illumina DNA sequencing platform. Includes filtering, quality control, simulation, peakfinding, visualization, and comparison of samples.
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OptimizeSNP
Selects SNPs and samples with known genotypes for microarray design
Program apply linear programming to minimize the number of microarrays and hybridization experiments that need to be undertaken in order to cover most of the predicted expressed SNPs.Dependencies:. 1) mampl.exe must be in system PATH 2) CPLEX 12.2 must be installed. cplexamp.exe must be in system PATH mampl.exe can be obtained from any program containing AMPL. I obtained AMPL from trial version of MOSEK at http://www.mosek.com/. CPLEX 12.0 can be obtained from... -
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SimBac is a software package for simulating bacterial genome evolution. It outputs samples of DNA sequences at each generation & allows testing of major evolutionary mechanisms, including mutation, recombination, genetic drift, and natural selection.
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OpenCloudAV is the first open source multi-engine based malware analysis service from the network cloud. This project is in alpha release, run only in GNU/Linux, and is mainly developed using Perl SOAP::Lite module. Version 0.2 alpha is available now
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SisyphusScan is a wrapper to malware scanners that can be used for cyclic scanning of files (i.e. accross several executions). The scanning process is optimized with a cache. Currently supports the clamd daemon from the ClamAV tools suite.
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FDNS measures, detects, and notices the extremely anomalous traffic according to the bulk distribution aspect of flooding traffic, including: packet flooding attack, portscan, spam distribution.
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The High Throughput Sequence Analysis Pipeline uses freely available bioinformatics tools from NCBI, Phylip, EMBOSS and clustalw to identify and group closely related DNA samples. It can be run on *Nix systems linearly or in parallel using the SGE.
