Search Results for "input file rings"
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Showing 35 open source projects for "input file rings"
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OpenDetex
Tool for extracting plain text from TeX and LaTeX sources
Improved version of Detex, tool for extracting plain text from TeX and LaTeX sources. OpenDetex is a program to remove TeX constructs from a text file. It recognizes the \input command. This program assumes it is dealing with LaTeX input if it sees the string "\begin{document}" in the text. It recognizes the \include and \includeonly commands. -
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PerlPP
Perl preprocessor - embed Perl source in any file
Translates Text+Perl to Text. It can be used for any kind of text templating, e.g. code generation. No external modules are required, just a single file. Requires Perl 5.10.1+. PerlPP runs in two passes: it generates a Perl script from your input, and then it runs the generated script. If you see error at (eval ##) (for some number ##), it means there was an error in the generated script. The -D switch defines elements of %D. If you do not specify a value, the value true (a constant... -
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Quiz/Survey/Test - QST
A Free, complete, enterprise grade, open source exam management system
QST, the worlds unparalleled open source online/lan assessment software. From a quick quiz on your phone to very large scale, high stakes, proctored desktop testing, we make it easy/secure/economical. Our intuitive design contains features (Immediate detailed results, Create/Export/Import/Convert Questions, WYSIWYG/Math-Chemistry/Basic Editors, Question/Item Bank, Multiple Question Types, Multiple Delivery Styles, Multiple Delivery/Results Options, Adaptive/Branching Questions, Randomly... -
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xoscope is a digital oscilloscope using input from a sound card or EsounD and/or a ProbeScope/osziFOX and will soon support Bitscope hardware. Includes 8 signal displays, variable time scale, math, memory, measurements, and file save/load.
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Digital Payments by Deluxe Payment ExchangeSave time, money and your sanity. Deluxe Payment Exchange+ (DPX+) is our integrated payments solution that streamlines and automates your accounts payable (AP) disbursements. DPX+ ensures secure payments and offers suppliers alternate ways to receive funds, including mailed checks, ACH, virtual credit cards, debit cards, or eCheck payments. By simply integrating with your existing accounting software like QuickBooks®, you’ll implement efficient payment solutions for AP with ease—without costly development fees or untimely delays.
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Chordii
Easy lead sheets from text input
ChordPro creates elegant, stafless lead sheets for musicians needing only chords and lyrics. It processes plain text input in ChordPro format and it is a rewrite of the old though still popular Chord/Chordii programs. -
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pgn4web
javascript chess games viewer for websites, blogs and live broadcasts
pgn4web is a javascript chess games viewer for websites, blogs and live broadcasts. "pgn4web has a clean design, and is easily integrated and configured in wordpress. And yet, below that layer of simplicity, it has enough bells and whistles to allow for more baroque needs and taste. A truly great plugin." GM Tiger Hillarp, using the pgn4web plugin for wordpress on his site chess at the bag of cats, May 2013. "We wanted a live viewer that could work on tablets and mobile phones. pgn4web... -
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TaxOnTree
A program for associating taxonomic information in a phylogenetic tree
TaxOnTree is a phylogenetic program for associating Taxonomic information in a phylogenetic tree. The output is a NEX format tree file configured to be opened in FigTree, that users can promptly color by any taxa or by the ancestrality shared by sequences with query. Input can be a Fasta formatted file to be used in a BLAST search or a list of sequences represented by their identifiers (UniProtAC or NCBI gi), if a cluster is already available. Also, a newick file produced with user software... -
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Integrator
Integrates proteomic searches from multiple search engines
Perl program that integrates proteomic searches from multiple search engines, and outputs LymPHOS2 input proteomic data file. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/integrator/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org... -
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HiTerminalLogger
Color Hilighted Serial COM Console Reader & html report for Windows
... to the tools like HTerm and TerraTerm, it runs internally with the perl subsystem, which you don't need to care. In case the patthern file (with -p option) isn't given as the input, then the logs are printed with the default color (white) with the Timestamps for every new line of the Text. You do not need to install. Just download and run it in your bash console Terminal, that support ANSI coloring (like git bash for windows/ console2/ cmder), and run it. -
NeoLoad is a very comprehensive tool if you are looking for a performance test tool for web applications and other applicationsYour applications are all built differently, but they all need to perform. NeoLoad simplifies and scales performance testing for everything, from APIs and microservices, to end-to-end application testing through innovative protocol and browser-based capabilities.
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mfsizes
Multi-FASTA sequence (DNA or protein) statistics calculator.
A simple command-line utility to calculate biological sequence (DNA or protein) sizes in a (multi) FASTA file. It gives averages, GC (or methionine) content, N50, N90, N95, number of N's, and total bases, and can also report by codon if requested. -
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CRISPR-offinder-v1-2
A CRISPR tool for user-defined protospacer adjacent motif
CRISPR/Cas system undoubtedly holds great potential for genome editing. Target site cleavage by CRISPR technology requires a protospacer adjacent motif (PAM) immediately downstream or upstream of the protospacer element to which the sgRNA binds. However, Cas9 from different types of bacteria or variant recognizes different PAM sequences. To meet the needs of different CRISPR system with specific and efficient sgRNA design, CRISPR-offinder was developed. Given an input FASTA file of the target... -
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SendCommand is a Perl script that uses the Expect library to automate telnet and ssh sessions on remote hosts (Cisco, Netscreen, Bluecoat and more). Executes commands and outputs results to stdout or into files. It aims to be a very flexible tool.
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Ringlink is a CGI Perl program that provides the tools necessary to build and run rings of websites, i.e. systems of links between websites of similar contents. For an overview of Project Ringlink, please visit the Home Page at www.ringlink.org.
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ISVASE
identification of sequence variant associated with splicing event
To generate correct mature mRNAs, the exons must be identified and joined together precisely and efficiently by RNA splicing mechanism. It is to be noted that about one third or a half of all disease-causing mutations effect RNA splicing. However, there is little bioinformatics tools to directly identify sequence variants associated with splicing events (SVASE) based on RNA-seq data. We developed ISVASE, a simple and convenient tool for identifying SVASE directly using RNA-seq data.... -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade... -
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docx2txt
Perl based utility to extract formatted text content from MS Docx file
Docx2txt is a Perl based command-line utility to convert (even corrupted) Microsoft docx documents to reasonably formatted text files, along with appropriate character conversions. Apart from Perl it also requires a command line unzipping program like unzip/7z/pkzipc/wzunzip. -
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Protdraw
Create portable, flexible domain drawings of protein sequences
For ProtDraw to work on MacOS Yosemite, you must install a patched Pert Tk. Go to https://github.com/eserte/perl-tk and click the Download zip button. Run the unzip command, cd to the extracted directory and follow the directions in the 'INSTALL' file (using 'sudo' if necessary). ProtDraw creates flexible, easily-interpretable and portable illustrations of the domain structures of input sequences. ProtDraw is accompanied by makeProtDraw, a helper program which runs hmmer3 on a specified set... -
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Average
Command-line calculator of basic statistics.
... in the terminal if Average is run without specifying a file -- in which case, input can be terminated by pressing Ctrl-D. It is possible to choose the output of a single statistic (just the value, no labels), instead of the fully detailed output (default). -
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get_iplayeri
Run saved get_iplayer searches & interactively choose to record or not
get_iplayeri reads arguments to get_iplayer from a file (see http://www.infradead.org/get_iplayer/html/get_iplayer.html), runs get_iplayer to display the matching programmes and asks the user interactively which, if any, they want to record. Multiple searches and collections of searches can appear in the input, reflecting the user's TV viewing and radio and podcast listening habits. A variety of interactive commands are available to perform operations such as requesting further programme... -
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mobcalPARSER
A cross-platform interface for the *.mfj file format.
mobcalPARSER is a command line based PERL frontend/interface for MOBCAL with limited wrapper functionality. "MOBCAL - A Program to Calculate Mobilities" is available from Professor Martin F. Jarrold's webpage http://www.indiana.edu/~nano/software.html. -
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slurp
IO buffering in parallel environments with large files
'slurp' and 'glurp' are related utilites that help with buffering of file input and output (IO) in parallel environments with large files. They read and write files using a much larger buffer than typical system and program defaults. -
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this script is to visualize the coordinates data. the input is ncbiblast tabular format or a simple coordinates file. output is a png graph file
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It is a Perl script which takes a PCAP file as input and identifies valid subnets in the same. It then assumes a netmask of /24 and searches all those subnets for live IP's. It then groups all the IP addresses based on the number of hops.
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The project is aiming to do two things: track the total transit time it takes a news story to travel from site A to site Z across the net and we'll be indexing the content of the article at each hop and tracking the morphing of the content as it goes
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Set of perl scripts to analyse and check expiration of user certificates in Microsoft Windows Certification Authority. Output is in HTML with list of expiration state of latest user certificates. Expirated are marked. List can be sent by e-mail.