Search Results for "github"
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Showing 74 open source projects for "github"
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SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools
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XMLTV
XMLTV obtains and processes TV listings data
XMLTV is a set of programs to process TV (tvguide) listings and help manage your TV viewing, storing listings in an XML-based format. There are utilities to download TV listings for many countries, filter programs and Perl libraries to process listings. Our code is now available on Github at https://github.com/XMLTV/xmltv and new issues should be reported at https://github.com/XMLTV/xmltv/issues -
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Ddclient is a Perl client used to update dynamic DNS entries for accounts on 'Dynamic DNS Network Services' free DNS service. It currently supports a lot of different routers and a few different services. The project moved to github. See https://www.github.com/ddclient/ddclient for support.
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ArkiFuse - Arki's mod of "FUSE" emulator
Builds of "FUSE" emulator with my own mods
ArkiFuse is a free (GPL v2+) ZX Spectrum emulator based on FUSE Spectrum emulator (https://sourceforge.net/projects/fuse-emulator/). ArkiFuse contains some additional modifications and fixes, which have not been accepted or merged (yet) into the original FUSE project. See "Files" tab for download options of distribution files. Individual modifications/features can be tested with separately built distribution file(s) or .. - Nightly build of (Fuse) master, without mods - ... -
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bbbike
An information system for cyclists in Berlin and Brandenburg
A bike information system for cyclists in Berlin and Brandenburg (Germany) with a map view and a routing engine. There's a graphical interface (based on Perl/Tk) as well as an Web interface. Source code may be found at Github: https://github.com/eserte/bbbike/ -
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open-watcom
Open Watcom C/C++ compilers and tools Fork
C/C++ compilers and tools to compile and build for targets DOS 16/32-bit, RDOS, Windows 16/32-bit, OS/2 16/32 bit, Linux 32-bit (x86), Netware running on host OS DOS, Windows 16/32/64-bit, OS/2, Linux 32/64-bit (x86/x64) Open Watcom is now completely moved to GitHub Open Watcom 2.0 https://github.com/open-watcom/open-watcom-v2#open-watcom-v2-fork Open Watcom 1.9 https://github.com/open-watcom/open-watcom-1.9 -
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Broadcom-bt-firmware
Repository for various Broadcom Bluetooth firmware
broadcom-bt-firmware provides the firmware blobs needed by Linux to initialize Broadcom Bluetooth adapters found in many laptops and mini-PCIe/M.2 modules. On these devices, the kernel driver expects a small firmware image to be loaded at runtime before the controller becomes fully functional. The project aggregates known-working .hcd files, often extracted from vendor Windows drivers, and organizes them by chipset and device ID so users can match hardware quickly. Clear mapping tables and... -
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GitPrep
Portable GitHub system into your own server
GitPrep is a lightweight, self-hosted web interface for browsing Git repositories, typically deployed on a single server with minimal dependencies. It implements features like commit history browsing, file viewing and diffing, directory tree navigation, tag/branch switching, and README rendering, much like GitHub’s core UI. Because it’s written in Perl and designed for simplicity, setup is often as easy as cloning, configuring a webroot, and pointing to repositories. Authentication and basic... -
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COHCAP
City of Hope CpG Island Analysis Pipeline
COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through GitHub. 2) In addition to the original NAR paper, please see the following links: Benchmarks: http://www.nature.com/protocolexchange/protocols/2965#/introduction Protocol Exchange Files: http://sourceforge.net/projects/cohcap/files/Protocol_Exchange_Example.zip 3) Custom Annotation Files (including EPIC Array): https://sourceforge.net/projects/cohcap/files/additional_Bioconductor_annotations.zip/download -
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MetaErg
Metagenome Annotation Pipeline
...If you are using this pipeline for your work, please cite: Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999 The instructions on configuring and running the MetaErg pipeline is available at GitHub repository: https://github.com/xiaoli-dong/metaerg -
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Git-it
Git-it is a (Mac, Win, Linux) desktop app for learning Git and GitHub
Git-it is a desktop (Mac, Windows and Linux) app that teaches you how to use Git and GitHub on the command line. This application contains challenges for learning Git and GitHub, by using real Git and GitHub, not emulators. You'll be learning the awesome (and not so scary) command line and GitHub which means when you finish all of the challenges you'll have real repositories on your GitHub account and green squares on your contribution chart. ... -
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Sagacity
Security Assessment Data Management and Analysis Tool
We have migrated development of Sagacity to GitHub at https://github.com/cyberperspectives/sagacity Sagacity is a vulnerability assessment and STIG compliance data management tool designed to make security testing more efficient, effective and complete. Security assessments, especially those done for DoD and Federal organizations, produce tremendous amounts of scan and compliance data that security engineers must sort through and deconflict, identify untested requirements, and somehow analyze to communicate risk to their employers. ... -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other bisulfite treated sequencing) to determine genotypes and methylation levels simultaneously. ... -
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Web-CAT
Open-source automated grading of programming assignments
Web-CAT is a plug-in based web application for automatically grading programming assignments in many programming languages. This project also provides Eclipse plugins for electronic submission and feedback services directly from the Eclipse IDE. We now use github for source code control (https://github.com/web-cat), although all file releases are still provided here through SourceForge. The CVS repository here is for archival purposes only. -
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Simple Movie Catalog will scan a given directory for movies, query imdb for info and generate a catalog in html which offers sorting and grouping of found movies by different criteria. Note: source code has been moved to github: https://github.com/damienlangg/SimpleMovieCatalog
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...The project is dedicated to provide a napiprojekt client for embedded devices; like home NAS servers on which python is not available or there are problems with it (lack of all needed libraries) If you wish to post some patches, refer to project's GitHub repository: https://github.com/dagon666/napi
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pfm is a curses-based file manager in Perl. PLEASE NOTE: this project has moved to github. Find the latest version at: https://github.com/ruittenb/p-f-m
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BioUtils Perl Library
A collection of Perl modules for handling fasta/q sequences and files.
WARNING: BioUtils has been migrated to Github (Nov 2017). For the most up-to-date versions and info please visit: https://github.com/islandhopper81/BioUtils BioUtils are a collection of Perl modules for DNA sequence analysis in bioinformatics. BioUtils is a significantly faster and more memory efficient alternative to BioPerl. However, it's functionality is currently limited to the features listed below. -
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CMake BASIS
Build system And Software Implementation Standard
...More importantly, BASIS supplies a fully integrated suite of functionality to make the whole process seamless! Check out the web site for more information. The Git repository of this project is hosted on GitHub. Some interesting facts about this project can be found on Ohloh at https://www.ohloh.net/p/cmake-basis. -
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WebDAV CGI
WebDAV CGI brings your file service to the Web.
WebDAV CGI brings your file service to the Web and is moved to github [https://github.com/DanRohde/webdavcgi/]. WebDAV CGI adds a modern Web interface and WebDAV to file systems like AFS, NFS, CIFS/SMB, EXT, GFS, and so on. It preserves existing file permissions by using a included setuid/setgid wrapper. -
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Open Game Panel
Web based Game server control panel
OGP has moved to GitHub. The source code hosted here is obsolete and is no longer being updated. Please visit our GitHub here: https://github.com/OpenGamePanel/ A PHP webapp (formerly known as hldstart2) used to manage server softwares, such as, Halflife1/2, UT2004, UrbanTerror4 and Warsow (and many more). Powerful features, great for game server companies, and single users. -
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OpenKore
OpenKore is an automation tool for Ragnarok Online
OpenKore is an automation tool for Ragnarok Online-compatible games, authorized to be used on KoreRO. **MOVING TO GITHUB** As of February 28th 2016, the OpenKore project has moved to GitHub. Please see the OpenKore wiki for more information: http://openkore.com/index.php/Git This SourceForge page will remain online for now, but the project has been locked in "read-only" mode and no more updates will be published here. **DOWNLOADING KORE FROM THIS PAGE WILL GIVE YOU AN OLD VERSION** -
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
...The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in "Files" section) ############# GitHub : https://github.com/jbrayet/ncpro-seq -
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You can now find powerpc-utils and powerpc-utils-python on github. https://github.com/nfont/powerpc-utils https://github.com/nfont/powerpc-utils-python The powerpc-utils package provides a set of tools and utilities and utilities for maintaining and enabling certain features of Linux on Power.
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A set of tools for working with VCF files, such as those generated by the 1000 Genomes Project. This project is migrating to github: https://vcftools.github.io/
