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Showing 31 open source projects for "et"
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PINCIS
PINCIS.pl is a Perl bioinf. script to analyze PICS data
PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be concurrently used to generate cleavage specificity visualizations like the iceLogo (https://iomics.ugent.be/icelogoserver/create). -
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Microarray assosiated motif analyzer
Cis-element prediction tool from microarray data
...The accuracy of simulated gene expression was used to evaluate the quality of prediction and to optimize the parameters used in this method. After optimization, MAMA accurately simulated more than 87% of gene expression. See Kakei Y, Ogo Y, Itai RN, et al. (2013) Development of a novel prediction method of cis-elements to hypothesize collaborative functions of cis-element pairs in iron-deficient. Rice 6(1): 22. -
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CRISPR-offinder-v1-2
A CRISPR tool for user-defined protospacer adjacent motif
CRISPR/Cas system undoubtedly holds great potential for genome editing. Target site cleavage by CRISPR technology requires a protospacer adjacent motif (PAM) immediately downstream or upstream of the protospacer element to which the sgRNA binds. However, Cas9 from different types of bacteria or variant recognizes different PAM sequences. To meet the needs of different CRISPR system with specific and efficient sgRNA design, CRISPR-offinder was developed. Given an input FASTA file of the... -
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Projet sumtec
Nettoyage et préparation de corpus de transcriptions d'entretiens
Scripts réalisés dans le cadre du projet SUMTEC pour la préparation des corpus de transcription en vue d'une exploitation sur RQDA et IRAMUTEQ. http://www.msh-lorraine.fr/index.php?id=623 Le projet contient 3 programmes PERL. L'objectif consiste à récupérer des transcriptions d'entretien non structurées afin de les structurer sous la forme d'un arbre xml. L'intérêt consiste à pouvoir, in fine, identifier les tours de parole et séparer les discours des interviewés et des intervieweurs. -
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The Protein Similarity Network
Human protein similarity network used to predict drug safety.
...Your help and expertise are much appreciated ! If you have any questions, please do not hesitate to contact us in the forum or by email. Please see the original manuscript: Lopes, TJS, et al. (2015) - "Identifying problematic drugs based on the characteristics of their targets" - Frontiers in Pharmacology doi: 10.3389/fphar.2015.00186 -
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smeserver-bacula
A Bacula web-based management interface for SME (http://contribs.org)
A Bacula web-based management interface for SME (http://contribs.org) distribution and bacula packages Project has been made by ASPerience (http://www.asperience.fr/pole-systeme-et-reseaux/sauvegarde) for SME. Product is internally maintained. We have repackaged for SME 9.x and both bacula and bareos (https://sourceforge.net/projects/smeserver-bareos/). 1.4 is for SME SERVER 9.0 1.3 is for SME SERVER 7.4 Full set of screenshots: https://plus.google.com/photos/110107797324512983755/albums/6078551068603641249 Version for SME 7.4 was delivered with a patch for a new way of managing backups for notebooks (notebook opens a socket to director to pass through firewalls thus allowing to backup while notebook is away). ... -
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netxserv
Netxserv solution de telecommunications
Netxserv est une solution de télécommunications assurant : -Gestion TOIP et PABX -Gestion centralisée de points d'acces wifi Openwrt -Routeur multiprocoles (X25-XOT-HDLC,....) -Chiffrement de SMS. -Gestion sécurusée d'une flotte de téléphones Android. -Gestion Firewal et VPN -
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...MGEScan-non-LTR is a software for the identification of non-LTR retrotransposons in genomic sequences, following a computational approach inspired by a generalized hidden Markov model (GHMM). References: 1. M. Rho et al., "De novo identification of LTR retrotransposons in eukaryotic genomes", BMC Genomics (2007) 8:90. 2. M. Rho and H. Tang, "MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes", Nucleic Acids Research (2009) 37:21.
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Xris Malden Pictures
Perl scripts for image manipulations based on its EXIF metadata
Script Perl pour manipuler des images sur la base de leur métadonnées EXIF ... très utile pour les fichiers images bruts (raw) et en particuliers pour les appareils Nikon (utilisation de la métadonnée ShutterCount d'un appareil Nikon pour le renommage des fichiers) Pré-requis : quelques modules Perl Image::ExifTool, File::Basename and FileHandle 2 applications Mac OS X sont disponibles pour lesquelles les pré-requis sont inclus --- Perl scripts for image manipulations based on its EXIF metadata ... particularly for raw and Nikon raw images requirements : Perl modules Image::ExifTool, File::Basename and FileHandle Mac OS X applications include these requirements -
Go From AI Idea to AI App FastAccess Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.
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parastructure is a perl script collection to run the population genetics software STRUCTURE from Pritchard et al. 2000 (http://pritch.bsd.uchicago.edu/structure.html) in parallel on a cluster (beowulf type). Each run of K (the number of populations) is executed separately on each CPU of the cluster trough queue system based on PBS. A summary statistics table and distruct figures (Noah Rosenberg: http://www.stanford.edu/group/rosenberglab/distruct.html) are built at the end of the run. ...
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FBMsg
Facebook messages downloader and viewer
FBMsg is a tool which allows you to backup the enire inbox on your Facebook account (including attachments, coordinates et cetera) and makes a SQLite database containing all the data. FBMsgViewer allows you to read the content of the database. Hope you like it and find it useful! -
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ReferenceFree
Scripts for reference free genomic analysis
These are Python scripts plus C/C++ programs for automating the reference free genomic analysis described in: Kua C-S, Ruan J, Harting J, Ye C-X, Helmus MR, et al. (2012) Reference-Free Comparative Genomics of 174 Chloroplasts. PLoS One 7(11). http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0048995 Analytical concept conceived by CHCannon and CSKua. Original script written in Mathematica by CHCannon. -
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Neustar-Webtop
HTTP header aggregation tool
Based on dnstop, webtop reads either a live Ethernet stream or a pre-captured file of packets, and performs aggregations based on standard HTTP headers. It can operate in an interactive mode, as well as produce reports for inclusion into incident reports, et cetera. -
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ANDES. This is a library and a set of applications that can be used to analyze the results of deep sequencing results. (See Li et al.: ANDES: Statistical tools for the ANalyses of DEep Sequencing. BMC Research Notes 2010 3:199.)
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solargrapher
ComLynx protocol for solar inverters
solargrapher is a minimalistic implementation of the ComLynx protocol, spoken by solar inverters made by Danfoss, IBC Solar et al. It logs whatever data you deem interesting in rrd file and has a minimal example on how to produce graphs for a cgi-enables webserver from that. -
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Bioinformatics Perl extension for the analysis of antibody variable domain repertoires. Suitable for mammalian repertoire sequences obtained either by Sanger or 454 sequencing. Methods published in Glanville, Zhai, Berka et al, PNAS 2009.
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PheMaDB is a web-based data management system to store and analyze OmniLog Phenotype Microarray data. The manuscript can be accessed here: http://www.biomedcentral.com/1471-2105/12/109. Chang WE et al. BMC Bioinformatics. 2011 Apr 20;12(1):109.
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Projet qui consiste à la réalisation d'un outil d'audit de sécurité et de gestion de configuration réseau. Venez sur notre site pour être sur d'avoir la dernière version.
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This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. "Novel computational methods for increasing PCR primer design effectiveness in directed sequencing". BMC Bioinformatics 2008, 9:191.
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stdms is a french accronym for "Système de Traitement et de Distribution des Messages de Supervision", that is a program which is able to handle, manipulate and route network monitoring messages from place to place
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...E-Blah has a facet of features which include: private messaging, passworded and group board security, extensive logging, polls and sticky threads, mod_rewrite support, spam removal, et cetera.
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FreeBSD web hosting installation scripts to install and make standart web server to run on dedicated FreeBSD server or in FreeBSD Jail VM. Apache, MySQL, PostgreSQL, PHP, Perl, XML et cetera From Scratch! Just untar and run, it's simple!
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Real-time player ratings and statistics for Return to Castle Wolfenstein (RTCW) and Wolfenstein Enemy Territory (ET) [requires C++/Perl/MySQL/PHP]
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SIRIUS (Systčme d\'information pour la Réforme Inter-Universitaire et Scolaire) est un projet open source de développement d\'une application de gestion des établissements de l\'enseignement supérieur au Maroc. Gestion étudiant, notes, absences, etc.
