Search Results for "effect"

vcf2maf is a Perl-based tool developed by the Memorial Sloan Kettering Cancer Center to convert Variant Call Format (VCF) files into Mutation Annotation Format (MAF) files. This conversion standardizes variant annotations, facilitating downstream analyses in cancer genomics. ​

...The following commands work mostly analogously to their C preprocessor counterparts. but $fn can be determined programmatically. Note that defines set with -D or -s do not take effect until after the script has been generated, which is after the macro code runs.

...The EPP Server, gives Registrars the ability to add, modify and delete information associated with domain names, name servers, contacts information on a real-time basis. It is important to note that each Registrar may only effect information about domain names for which it is responsible. mod_epp 1.10 for Apache 2.

I've been noticing for a while that the graphs of "growth for the last 10 years" in the mutual fund prospectuses depend a lot on the starting point: if the starting point was high (i.e. after previous growth), the following growth would look poor compared to the competition, and the other way around. So I wrote some simple scripts to try to compensate for this effect.

To generate correct mature mRNAs, the exons must be identified and joined together precisely and efficiently by RNA splicing mechanism. It is to be noted that about one third or a half of all disease-causing mutations effect RNA splicing. However, there is little bioinformatics tools to directly identify sequence variants associated with splicing events (SVASE) based on RNA-seq data. We developed ISVASE, a simple and convenient tool for identifying SVASE directly using RNA-seq data. Comparing with the existing software PVAAS, our method has several advantages such as stringent rule-depended filters and statistical filters in each step, detection sequence variants for known splicing events, identification sequence variants in two parts of splicing (junction) separately, detection junction shift events if providing known splicing annotation, evaluating splicing signal, comparing with known DNA mutation and/or RNA editing data, and short running time.

The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor. The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the modules. ...

...Passage lookup feature which gives you the very feel of using a bible. 5. Keyword search feature which allows you to search for a specific keyword and get all the results in the bible. 6. Combined effect of both the features of Bookmark& Notes which helps your bible study easier. 7. Completely open source so that anyone can redevelop it in the future. 8. Feature to add other bible versions.

Simple portable interface to compare project analytics, designed to assist project managers. By measuring market penetration, the effect of different kinds of development on project sustainability, can assist with decision making. JISC demonstrator.

iXhash is a plugin for the popular spam filter SpamAssassin. It computes MD5 checksums of fragments of the body of an e-mail and compares them to those of know spam using DNS queries to a RBL-like name server. In effect this gives SpamAssassin access

The Mediawiki Pipes extension implements external data access and processing through a series of configurable nodes that form a Pipe. The net effect is to create a Wiki based application framework. See http://www.mediawiki.org/wiki/Extension:Pipes

Tidyview is a Perl/Tk application to preview the effect of perltidy options on your source code. Perltidy is extremely flexible, but the flip-side of this is that is can be difficult to check the effect of options in combination - using Tidyview can help.

A Comprehensive Fixed Assets Register for Tax Effect Accounting (Australian Standards). Web based Perl and Postgresql. Multi user, Multi Entity. A good one for Government departments to hose to NGO\'s so they can keep track off all the assets they have

'Lizzie' a mental-health aid, for keeping track of moods, mood stability, and factors that effect wellbeing.