Search Results for "data structure project in java"

The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.

The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.

Project name: android-backup-toolkit URL: https://sourceforge.net/p/android-backup-toolkit/ License: various (see individual projects) Authors: various (see individual projects) This project is simply a compilation of the six following projects, both latest source code and binaries: * android-backup-extractor: https://sourceforge.net/projects/adbextractor/ * android-backup-splitter: https://sourceforge.net/p/adb-split/ *...

Hacker Scripts is a cheeky collection of small automation scripts and language ports collected under the tagline “Based on a true story.” The repository gathers playful utilities (originally shell and Ruby scripts) that automate short, real-world tasks — for example, sending a quick “late at work” text when SSH sessions are active, firing off an automated “I’m sick / working from home” email on certain mornings, or even talking to a networked coffee machine to start brewing at precisely the...

As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the wiki: http://sourceforge.net/p/adamajava/wiki/Home/

Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data....

A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are...

GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.

TreeBASE is a database and web front end that stores phylogenetic trees and the data matrices used to generate them. The current iteration comprises a complete rewrite of the schema and web layer, and will include a web services layer.

This project develops an open source editor for Clavia Nord Modular and Micro Modular synthesizers.

Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no

This project aims the requirement of managed informations / documents in the treatment of patients, i.e. integrated care. The underlaying data model implements standards of electronic health recording, the project is based on a SQL db and Java EE framework. This is currently a student driven project for educational purposes.

This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text.

Config::Model enables a project developer to provide a graphical configuration editor for his users. For this, the developer must describe the structure and constraints of his project's config (i.e. the config model). Files are available on CPAN

This SourceForge page is no longer maintained. To find downloads, source code, or documentation for the PostgreSQL project, please see our home page: http://www.postgresql.org.

This is a project regarding parsing data from different(general) sources and representing it in form of graphs.

Project moved to https://github.com/ivandeex/optikus

Data and animal management software for large-scale phenotype screening Used by GNF for mouse ENU mutagenesis project. Data visualization & analysis, animal husbandry management, & automated QTL mapping. Usable as stand alone animal husbandry system.

The Genomic Diversity and Phenotype Data Model (GDPDM) captures molecular and phenotypic diversity data. MySQL databases are used to implement the schema. This project develops software tools (written in Java, Perl, etc.) associated with this model.

Warren-CMS is a content management system with developer-provided file type handlers, built-in link and grouping management, and an XML interface that makes writing proprietary clients easy for developers who wish to do so.

The Canopy project is an initiative to merge and expand the functionality of Perl-speaks-NONMEM (PsN), Census, Xpose and PopED. The goal is to produce a coherent, inclusive and convenient platform for pharmacometric data analysis.

OpenESM project to promote software development of enterprise systems management. Focus areas are (Performance and Availability, Configuration Management, Data Warehousing, Reporting and Correlation).

VDC has been superseded by DVN: https://sourceforge.net/projects/dvn/ ---- The Virtual Data Center project is building an operational, open-source, digital library to enable the sharing of quantitative research data, and the development of distribute

Engine for creating web-based hierarchical database systems. Describe your hierarchical data structure within the engine's metadata and it will present you with a web form based data capture and retrieval application for managing your data.

OpenDCM is an Open Source Data Center Management project. System audits, rapid file/software deployment, os provisioning, reporting and more. Automate repetitive tasks and simplify the work of sysadmins in large scale data centers.