Search Results for "gnu/linux" - Page 30
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Showing 7986 open source projects for "gnu/linux"
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Seqping
Gene Prediction Pipeline for Plant Genomes
Gene Prediction Pipeline for Plant Genomes using Self-Training Gene Models and Transcriptomic Data -
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A forwarding address system with a web user management interface. End users can supply disposable email addresses (DEA) that, by default, expire after receiving a few emails but can be extended. Users can whitelist senders. Includes a captcha
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CSBB-v2.0
Computational Suite for Bioinformaticians and Biologists
...Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 16 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc. -
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Squid Analyzer parses Squid proxy access log and reports general statistics about hits, bytes, users, networks, top URLs, and top second level domains. Statistic reports are oriented toward user and bandwidth control.
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Verlihub
NMDC Hub Server
Verlihub is a NMDC hub server that runs on all operating systems. It is written in C++ and has many rich plugins including Lua, Python and Perl. -
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wxCode project is a collection of reusable components based on the cross-platform wxWidgets GUI toolkit. The project provides various tools and facilities for building, maintaining and releasing wxWidgets-based code. Visit the website for more info. Note: As of January 2018 this project has been retired.
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This project has come to an end. If you want, you can download the sources and continue from there. The repository will be wiped clean by the end of 2017.
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Linux-Hardware-Guide
Linux Hardware Compatibility Database
The Linux-Hardware-Guide provides a database of hardware components and investigates the Linux compatibility of the equipment. -
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wxPerl
Perl wrappers for the wxWidgets C++ toolkit
wxPerl is a Perl distribution wrapping the wxWidgets GUI toolkit (www.wxwidgets.org) -
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AlienVault OSSIM
Open Source SIEM
OSSIM, AlienVault’s Open Source Security Information and Event Management (SIEM) product, provides event collection, normalization and correlation. For more advanced functionality, AlienVault Unified Security Management (USM) builds on OSSIM with these additional capabilities: * Log management * Advanced threat detection with a continuously updated library of pre-built correlation rules * Actionable threat intelligence updates from AlienVault Labs Security Research Team * Rich... -
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Vanilla
An OpenResty Lua MVC Web Framework
An OpenResty Lua MVC Web Framework. Vanilla supports many configuration options, and many of those options have default values. You can use default installation but if your enviroment values different from which vanilla default, please config it with yours. -
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Citrus Perl
Binary Perl Distribution
Binary perl distribution with pre-built modules for Wx, DBD::Pg and DBD::mysql. -
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WebKNotes is a Web-based knowledge/notes database. WebKNotes 1 was written in Perl and used a directory hierarchy for storage. WebKNotes 2 is under development, and is entirely client side Javascript.
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SendCommand is a Perl script that uses the Expect library to automate telnet and ssh sessions on remote hosts (Cisco, Netscreen, Bluecoat and more). Executes commands and outputs results to stdout or into files. It aims to be a very flexible tool.
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OraMasking
Data masking tool for Oracle database
For Oracle database, mask sensitive data by replacement (static or expression), substitution (synthetic data set is included), random values (Lorum Ipsum) or deletion. Generates update/delete statements or triggers or runs directly against the database. -
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The increasing demand of next-generation sequencing (NGS) studies has remarked the necessity of integrated and reliable pipelines to analyse deep-sequencing experiments in an efficient way. We present RUbioSeq+, a stand-alone and multiplatform application for the integrated analysis of NGS data. More specifically, our software implements pipelines for the analysis of single nucleotide and copy-number variation, bisulfite-seq and ChIP-seq experiments using well-established tools to perform...
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epyunit
PyUnit and PyDev extensions for arbitrary Executables
The package 'epyunit' provides extensions for PyUnit and PyDev. * Extensions for PyUnit - Unittests for arbitrary executables. * Extensions for PyDev - Automation of search and load of pydevd.py The extensions are applicable from commandline and/or within Eclipse. Online manuals: - https://pythonhosted.org/epyunit/ PyPi repository: - https://pypi.python.org/pypi/epyunit Current application examples are: - bash-core - http://bash-core.sourceforge.net Nickname -... -
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Manitou-Mail is a free Qt-based database-driven Mail User Agent with associated scripts. It stores mailboxes and mail messages as structured data, accessible (possibly concurrently) by SQL, in addition to providing common mailer features and some more.
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BioUtils Perl Library
A collection of Perl modules for handling fasta/q sequences and files.
WARNING: BioUtils has been migrated to Github (Nov 2017). For the most up-to-date versions and info please visit: https://github.com/islandhopper81/BioUtils BioUtils are a collection of Perl modules for DNA sequence analysis in bioinformatics. BioUtils is a significantly faster and more memory efficient alternative to BioPerl. However, it's functionality is currently limited to the features listed below. -
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Searches message of Open Source Softwares. And also provides more information of the messages that are writen with Wiki style by you registered as writer. This software is a web application based on perl-catalyst.
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Hamstr
A tool for directed ortholog search in ESTs and proteins
HaMStR has moved to https://github.com/bionf/hamstr where it is now part of the HaMStR-OneSeq package. HaMStR is a profile hidden Markov model based tool for a directed ortholog search in EST or protein sequence data. The program takes a pre-defined core group of orthologous sequences (core orthologs) and a set of sequences from a search taxon as input. HaMStR then combines in a two-step strategy a pHMM based search and a reverse search via BLAST to extend the core ortholog group with... -
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ViralFusionSeq [VFS]
Accurately discover viral integration events and fusion transcripts
VFS was fullly tested under Ubuntu/Debian system. ** Announcement 1**: VFS is superior to Virus-Clip. https://sourceforge.net/projects/viralfusionseq/files/VFS.vs.Virus-Clip.pdf/download As of 2016, VFS is the only viral integration tool available at NIH HPC system. https://hpc.nih.gov/apps/ViralFusionSeq/ ViralFusionSeq (VFS) is a versatile high-throughput sequencing (HTS) tool for discovering viral integration events and reconstruct fusion transcripts at single-base... -
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Koalx
Simple IRC bot - Perl
Simple IRC bot that can slightly interact with the users. -
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SIGAR (System Information Gatherer and Reporter) is a cross-platform, cross-language library and command-line tool for accessing operating system and hardware level information in Java, Perl and .NET.
